Part A | 5
60 Part A Marine Flora and Fauna
Cyanidioschyzon merolae 10D, Nature 428, 653–657
(2004)
5.27 S.S. Merchant, S.E. Prochnik, O. Vallon, E.H. Harris,
S.J. Karpowicz, G.B. Witman, A. Terry, A. Salamov,
L.K. Fritz-Laylin, L. Marechal-Drouard, W.F. Marshall,
L.H. Qu, D.R. Nelson, A.A. Sanderfoot, M.H. Spalding, V.V. Kapitonov, Q.H. Ren, P. Ferris, E. Lindquist,
H. Shapiro, S.M. Lucas, J. Grimwood, J. Schmutz,
P. Cardol, H. Cerutti, G. Chanfreau, C.L. Chen, V. Cognat, M.T. Croft, R. Dent, S. Dutcher, E. Fernandez,
H. Fukuzawa, D. Gonzalez-Ballester, D. GonzalezHalphen, A. Hallmann, M. Hanikenne, M. Hippler, W. Inwood, K. Jabbari, M. Kalanon, R. Kuras,
P.A. Lefebvre, S.D. Lemaire, A.V. Lobanov, M. Lohr,
A. Manuell, I. Meir, L. Mets, M. Mittag, T. Mittelmeier,
J.V. Moroney, J. Moseley, C. Napoli, A.M. Nedelcu,
K. Niyogi, S.V. Novoselov, I.T. Paulsen, G. Pazour,
S. Purton, J.P. Ral, D.M. Riano-Pachon, W. Riekhof,
L. Rymarquis, M. Schroda, D. Stern, J. Umen, R. Willows, N. Wilson, S.L. Zimmer, J. Allmer, J. Balk,
K. Bisova, C.J. Chen, M. Elias, K. Gendler, C. Hauser,
M.R. Lamb, H. Ledford, J.C. Long, J. Minagawa,
M.D. Page, J.M. Pan, W. Pootakham, S. Roje, A. Rose,
E. Stahlberg, A.M. Terauchi, P.F. Yang, S. Ball,
C. Bowler, C.L. Dieckmann, V.N. Gladyshev, P. Green,
R. Jorgensen, S. Mayfield, B. Mueller-Roeber, S. Rajamani, R.T. Sayre, P. Brokstein, I. Dubchak, D. Goodstein, L. Hornick, Y.W. Huang, J. Jhaveri, Y.G. Luo,
D. Martinez, W.C.A. Ngau, B. Otillar, A. Poliakov,
A. Porter, L. Szajkowski, G. Werner, K.M. Zhou,
I.V. Grigoriev, D.S. Rokhsar, A.R. Grossman, Chlamydomonas Annotation, JGI Annotation Team: The
Chlamydomonas genome reveals the evolution of
key animal and plant functions, Science 318, 245–
251 (2007)
5.28 G. Blanc, G. Duncan, I. Agarkova, M. Borodovsky,
J. Gurnon, A. Kuo, E. Lindquist, S. Lucas, J. Pangilinan, J. Polle, A. Salamov, A. Terry, T. Yamada,
D.D. Dunigan, I.V. Grigoriev, J.M. Claverie, J.L. Van
Etten: The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution
with viruses, and cryptic sex, Plant Cell. 22, 2943–
2955 (2010)
5.29 A.Z. Worden, J.H. Lee, T. Mock, P. Rouze, M.P. Simmons, A.L. Aerts, A.E. Allen, M.L. Cuvelier, E. Derelle,
M.V. Everett, E. Foulon, J. Grimwood, H. Gundlach,
B. Henrissat, C. Napoli, S.M. McDonald, M.S. Parker,
S. Rombauts, A. Salamov, P. Von Dassow, J.H. Badger, P.M. Coutinho, E. Demir, I. Dubchak, C. Gentemann, W. Eikrem, J.E. Gready, U. John, W. Lanier,
E.A. Lindquist, S. Lucas, K.F.X. Mayer, H. Moreau,
F. Not, R. Otillar, O. Panaud, J. Pangilinan, I. Paulsen,
B. Piegu, A. Poliakov, S. Robbens, J. Schmutz,
E. Toulza, T. Wyss, A. Zelensky, K. Zhou, E.V. Armbrust, D. Bhattacharya, U.W. Goodenough, Y. Van de
Peer, I.V. Grigoriev: Green evolution and dynamic
adaptations revealed by genomes of the marine
Picoeukaryotes micromonas, Science 324, 268–272
(2009)
5.30 S.E. Prochnik, J. Umen, A.M. Nedelcu, A. Hallmann, S.M. Miller, I. Nishii, P. Ferris, A. Kuo,
T. Mitros, L.K. Fritz-Laylin, U. Hellsten, J. Chapman, O. Simakov, S.A. Rensing, A. Terry, J. Pangilinan, V. Kapitonov, J. Jurka, A. Salamov, H. Shapiro,
J. Schmutz, J. Grimwood, E. Lindquist, S. Lucas,
I.V. Grigoriev, R. Schmitt, D. Kirk, D.S. Rokhsar: Genomic analysis of organismal complexity in the
multicellular green alga Volvox carteri, Science 329,
223–226 (2010)
5.31 B. Palenik, J. Grimwood, A. Aerts, P. Rouze,
A. Salamov, N. Putnam, C. Dupont, R. Jorgensen,
E. Derelle, S. Rombauts, K.M. Zhou, R. Otillar,
S.S. Merchant, S. Podell, T. Gaasterland, C. Napoli,
K. Gendler, A. Manuell, V. Tai, O. Vallon, G. Piganeau, S. Jancek, M. Heijde, K. Jabbari, C. Bowler,
M. Lohr, S. Robbens, G. Werner, I. Dubchak, G.J. Pazour, Q.H. Ren, I. Paulsen, C. Delwiche, J. Schmutz,
D. Rokhsar, Y. Van de Peer, H. Moreau, I.V. Grigoriev:
The tiny eukaryote Ostreococcus provides genomic
insights into the paradox of plankton speciation,
Proc. Natl. Acad. Sci. USA 104, 7705–7710 (2007)
5.32 E. Derelle, C. Ferraz, S. Rombauts, P. Rouze,
A.Z. Worden, S. Robbens, F. Partensky, S. Degroeve,
S. Echeynie, R. Cooke, Y. Saeys, J. Wuyts, K. Jabbari,
C. Bowler, O. Panaud, B. Piegu, S.G. Ball, J.P. Ral,
F.Y. Bouget, G. Piganeau, B. De Baets, A. Picard,
M. Delseny, J. Demaille, Y. Van de Peer, H. Moreau:
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features,
Proc. Natl. Acad. Sci. USA 103, 11647–11652 (2006)
5.33 G. Blanc, G. Duncan, I. Agarkova, M. Borodovsky,
J. Gurnon, A. Kuo, E. Lindquist, S. Lucas, J. Pangilinan, J. Polle, A. Salamov, A. Terry, T. Yamada,
D.D. Dunigan, I.V. Grigoriev, J.M. Claverie, J.L. Van
Etten: The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of
cold adaptation, Genome Biol. 13, R39 (2012)
5.34 J. Lu, C. Sheahan, P.C. Fu: Metabolic engineering of
algae for fourth generation biofuels production, Energy Environ. Sci. 4, 2451–2466 (2011)
5.35 R. Radakovits, R.E. Jinkerson, S.I. Fuerstenberg,
H. Tae, R.E. Settlage, J.L. Boore, M.C. Posewitz: Draft
genome sequence and genetic transformation of
the oleaginous alga Nannochloropis gaditana, Nat.
Commun. 3, 686 (2012)
5.36 T.G. Dunahay, E.E. Jarvis, P.G. Roessler: Genetic
transformation of the diatoms Cyclotella cryptica
and Navicula saprophila, J. Phycol. 31, 1004–1012
(1995)
5.37 H. Fischer, I. Robl, M. Sumper, N. Kroger: Targeting
and covalent modification of cell wall and membrane proteins heterologously expressed in the diatom Cylindrotheca fusiformis (Bacillariophyceae),
J. Phycol. 35, 113–120 (1999)
5.38 A. Miyagawa-Yamaguchi, T. Okami, N. Kira, H. Yamaguchi, K. Ohnishi, M. Adachi: Stable nuclear transformation of the diatom Chaetoceros sp., Phycol.
Res. 59, 113–119 (2011)
60 Part A Marine Flora and Fauna
Cyanidioschyzon merolae 10D, Nature 428, 653–657
(2004)
5.27 S.S. Merchant, S.E. Prochnik, O. Vallon, E.H. Harris,
S.J. Karpowicz, G.B. Witman, A. Terry, A. Salamov,
L.K. Fritz-Laylin, L. Marechal-Drouard, W.F. Marshall,
L.H. Qu, D.R. Nelson, A.A. Sanderfoot, M.H. Spalding, V.V. Kapitonov, Q.H. Ren, P. Ferris, E. Lindquist,
H. Shapiro, S.M. Lucas, J. Grimwood, J. Schmutz,
P. Cardol, H. Cerutti, G. Chanfreau, C.L. Chen, V. Cognat, M.T. Croft, R. Dent, S. Dutcher, E. Fernandez,
H. Fukuzawa, D. Gonzalez-Ballester, D. GonzalezHalphen, A. Hallmann, M. Hanikenne, M. Hippler, W. Inwood, K. Jabbari, M. Kalanon, R. Kuras,
P.A. Lefebvre, S.D. Lemaire, A.V. Lobanov, M. Lohr,
A. Manuell, I. Meir, L. Mets, M. Mittag, T. Mittelmeier,
J.V. Moroney, J. Moseley, C. Napoli, A.M. Nedelcu,
K. Niyogi, S.V. Novoselov, I.T. Paulsen, G. Pazour,
S. Purton, J.P. Ral, D.M. Riano-Pachon, W. Riekhof,
L. Rymarquis, M. Schroda, D. Stern, J. Umen, R. Willows, N. Wilson, S.L. Zimmer, J. Allmer, J. Balk,
K. Bisova, C.J. Chen, M. Elias, K. Gendler, C. Hauser,
M.R. Lamb, H. Ledford, J.C. Long, J. Minagawa,
M.D. Page, J.M. Pan, W. Pootakham, S. Roje, A. Rose,
E. Stahlberg, A.M. Terauchi, P.F. Yang, S. Ball,
C. Bowler, C.L. Dieckmann, V.N. Gladyshev, P. Green,
R. Jorgensen, S. Mayfield, B. Mueller-Roeber, S. Rajamani, R.T. Sayre, P. Brokstein, I. Dubchak, D. Goodstein, L. Hornick, Y.W. Huang, J. Jhaveri, Y.G. Luo,
D. Martinez, W.C.A. Ngau, B. Otillar, A. Poliakov,
A. Porter, L. Szajkowski, G. Werner, K.M. Zhou,
I.V. Grigoriev, D.S. Rokhsar, A.R. Grossman, Chlamydomonas Annotation, JGI Annotation Team: The
Chlamydomonas genome reveals the evolution of
key animal and plant functions, Science 318, 245–
251 (2007)
5.28 G. Blanc, G. Duncan, I. Agarkova, M. Borodovsky,
J. Gurnon, A. Kuo, E. Lindquist, S. Lucas, J. Pangilinan, J. Polle, A. Salamov, A. Terry, T. Yamada,
D.D. Dunigan, I.V. Grigoriev, J.M. Claverie, J.L. Van
Etten: The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution
with viruses, and cryptic sex, Plant Cell. 22, 2943–
2955 (2010)
5.29 A.Z. Worden, J.H. Lee, T. Mock, P. Rouze, M.P. Simmons, A.L. Aerts, A.E. Allen, M.L. Cuvelier, E. Derelle,
M.V. Everett, E. Foulon, J. Grimwood, H. Gundlach,
B. Henrissat, C. Napoli, S.M. McDonald, M.S. Parker,
S. Rombauts, A. Salamov, P. Von Dassow, J.H. Badger, P.M. Coutinho, E. Demir, I. Dubchak, C. Gentemann, W. Eikrem, J.E. Gready, U. John, W. Lanier,
E.A. Lindquist, S. Lucas, K.F.X. Mayer, H. Moreau,
F. Not, R. Otillar, O. Panaud, J. Pangilinan, I. Paulsen,
B. Piegu, A. Poliakov, S. Robbens, J. Schmutz,
E. Toulza, T. Wyss, A. Zelensky, K. Zhou, E.V. Armbrust, D. Bhattacharya, U.W. Goodenough, Y. Van de
Peer, I.V. Grigoriev: Green evolution and dynamic
adaptations revealed by genomes of the marine
Picoeukaryotes micromonas, Science 324, 268–272
(2009)
5.30 S.E. Prochnik, J. Umen, A.M. Nedelcu, A. Hallmann, S.M. Miller, I. Nishii, P. Ferris, A. Kuo,
T. Mitros, L.K. Fritz-Laylin, U. Hellsten, J. Chapman, O. Simakov, S.A. Rensing, A. Terry, J. Pangilinan, V. Kapitonov, J. Jurka, A. Salamov, H. Shapiro,
J. Schmutz, J. Grimwood, E. Lindquist, S. Lucas,
I.V. Grigoriev, R. Schmitt, D. Kirk, D.S. Rokhsar: Genomic analysis of organismal complexity in the
multicellular green alga Volvox carteri, Science 329,
223–226 (2010)
5.31 B. Palenik, J. Grimwood, A. Aerts, P. Rouze,
A. Salamov, N. Putnam, C. Dupont, R. Jorgensen,
E. Derelle, S. Rombauts, K.M. Zhou, R. Otillar,
S.S. Merchant, S. Podell, T. Gaasterland, C. Napoli,
K. Gendler, A. Manuell, V. Tai, O. Vallon, G. Piganeau, S. Jancek, M. Heijde, K. Jabbari, C. Bowler,
M. Lohr, S. Robbens, G. Werner, I. Dubchak, G.J. Pazour, Q.H. Ren, I. Paulsen, C. Delwiche, J. Schmutz,
D. Rokhsar, Y. Van de Peer, H. Moreau, I.V. Grigoriev:
The tiny eukaryote Ostreococcus provides genomic
insights into the paradox of plankton speciation,
Proc. Natl. Acad. Sci. USA 104, 7705–7710 (2007)
5.32 E. Derelle, C. Ferraz, S. Rombauts, P. Rouze,
A.Z. Worden, S. Robbens, F. Partensky, S. Degroeve,
S. Echeynie, R. Cooke, Y. Saeys, J. Wuyts, K. Jabbari,
C. Bowler, O. Panaud, B. Piegu, S.G. Ball, J.P. Ral,
F.Y. Bouget, G. Piganeau, B. De Baets, A. Picard,
M. Delseny, J. Demaille, Y. Van de Peer, H. Moreau:
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features,
Proc. Natl. Acad. Sci. USA 103, 11647–11652 (2006)
5.33 G. Blanc, G. Duncan, I. Agarkova, M. Borodovsky,
J. Gurnon, A. Kuo, E. Lindquist, S. Lucas, J. Pangilinan, J. Polle, A. Salamov, A. Terry, T. Yamada,
D.D. Dunigan, I.V. Grigoriev, J.M. Claverie, J.L. Van
Etten: The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of
cold adaptation, Genome Biol. 13, R39 (2012)
5.34 J. Lu, C. Sheahan, P.C. Fu: Metabolic engineering of
algae for fourth generation biofuels production, Energy Environ. Sci. 4, 2451–2466 (2011)
5.35 R. Radakovits, R.E. Jinkerson, S.I. Fuerstenberg,
H. Tae, R.E. Settlage, J.L. Boore, M.C. Posewitz: Draft
genome sequence and genetic transformation of
the oleaginous alga Nannochloropis gaditana, Nat.
Commun. 3, 686 (2012)
5.36 T.G. Dunahay, E.E. Jarvis, P.G. Roessler: Genetic
transformation of the diatoms Cyclotella cryptica
and Navicula saprophila, J. Phycol. 31, 1004–1012
(1995)
5.37 H. Fischer, I. Robl, M. Sumper, N. Kroger: Targeting
and covalent modification of cell wall and membrane proteins heterologously expressed in the diatom Cylindrotheca fusiformis (Bacillariophyceae),
J. Phycol. 35, 113–120 (1999)
5.38 A. Miyagawa-Yamaguchi, T. Okami, N. Kira, H. Yamaguchi, K. Ohnishi, M. Adachi: Stable nuclear transformation of the diatom Chaetoceros sp., Phycol.
Res. 59, 113–119 (2011)