78
Software tools URL
Data type Details
Lipid MS
prediction tool
www.lipidmaps.org/tools/
LC-MS,
MS/MS
This tool performs searches with precursor ion or product-ion peak lists
on a variety of lipid classes, where structures are generated by
computational methods or are present in the LIPID MAPS Structure
Database. It also generates in silico product-ion peak lists for
glycosphingolipids
LipidPro
http://www.neurogenetics.biozentrum.uniwuerzburg.de/verbundprojekte/services/lipidpro/
LC-MS/
MS
This tool supports the identification of lipids by interpreting large
datasets generated by LC-MS/MS using the advanced data- independent
acquisition mode MS(E). It matches the retention time- aligned
mass-to-charge ratio data of molecular and fragment ions with a lipid
database and generates a report on all identified lipid species
LipidQA
http://lipidqa.dom.wustl.edu/
MS/MS
It is a lipid qualitative/quantitative analysis software platform to identify
and quantitate complex lipid molecular species in biological mixtures by
data- dependent scanning and fragment-ion database searching
LipidSearch
https://www.thermofisher.com/order/catalog/
product/IQLAAEGABSFAPCMBFK
LC-MS,
MS/MS
This software tool developed jointly by Prof. Ryo Taguchi and MKI
(Tokyo, Japan) is made available by Thermo Fisher Scientific. It enables
automatic identification and quantification of cellular lipid species from
large amount of mass spectrometric data obtained from both LC-MS and
shotgun lipidomic approaches. It contains about 1.5 million lipid ions
and their predicted fragmentation patterns. It supports a number of
acquisition modes, including PIS, NLS, and product-ion analysis
LipidView™
https://sciex.com/products/software/
lipidview-software
MS/MS
A data processing tool for the molecular characterization and
quantification of ESI-MS-based lipidomic data. It is based on parentand fragment-ion masses of lipid species. It streamlines various key
steps including automated data processing from template methods, lipid
species identification, comprehensive isotope contribution removal,
multiple internal standards-based quantification, and visualization and
result reporting
LipidXplorer
https://wiki.mpi-cbg.de/lipidx/Main_Page
MS/MS
An open-source software that supports the quantitative characterization
of complex lipidomes by interpreting large datasets of shotgun mass
spectra
Table 4.5 (continued)
P. Kumari
Software tools URL
Data type Details
Lipid MS
prediction tool
www.lipidmaps.org/tools/
LC-MS,
MS/MS
This tool performs searches with precursor ion or product-ion peak lists
on a variety of lipid classes, where structures are generated by
computational methods or are present in the LIPID MAPS Structure
Database. It also generates in silico product-ion peak lists for
glycosphingolipids
LipidPro
http://www.neurogenetics.biozentrum.uniwuerzburg.de/verbundprojekte/services/lipidpro/
LC-MS/
MS
This tool supports the identification of lipids by interpreting large
datasets generated by LC-MS/MS using the advanced data- independent
acquisition mode MS(E). It matches the retention time- aligned
mass-to-charge ratio data of molecular and fragment ions with a lipid
database and generates a report on all identified lipid species
LipidQA
http://lipidqa.dom.wustl.edu/
MS/MS
It is a lipid qualitative/quantitative analysis software platform to identify
and quantitate complex lipid molecular species in biological mixtures by
data- dependent scanning and fragment-ion database searching
LipidSearch
https://www.thermofisher.com/order/catalog/
product/IQLAAEGABSFAPCMBFK
LC-MS,
MS/MS
This software tool developed jointly by Prof. Ryo Taguchi and MKI
(Tokyo, Japan) is made available by Thermo Fisher Scientific. It enables
automatic identification and quantification of cellular lipid species from
large amount of mass spectrometric data obtained from both LC-MS and
shotgun lipidomic approaches. It contains about 1.5 million lipid ions
and their predicted fragmentation patterns. It supports a number of
acquisition modes, including PIS, NLS, and product-ion analysis
LipidView™
https://sciex.com/products/software/
lipidview-software
MS/MS
A data processing tool for the molecular characterization and
quantification of ESI-MS-based lipidomic data. It is based on parentand fragment-ion masses of lipid species. It streamlines various key
steps including automated data processing from template methods, lipid
species identification, comprehensive isotope contribution removal,
multiple internal standards-based quantification, and visualization and
result reporting
LipidXplorer
https://wiki.mpi-cbg.de/lipidx/Main_Page
MS/MS
An open-source software that supports the quantitative characterization
of complex lipidomes by interpreting large datasets of shotgun mass
spectra
Table 4.5 (continued)
P. Kumari