338
Bourne DG, Munn CB (2005) Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef. Environ Microbiol 7:1162–1174
Bourne D, Iida Y, Uthicke S, Smith-Keune C (2008) Changes in coral-associated microbial communities during a bleaching event. ISME J 2112:350–363
Bouvier T, del Giorgio PA (2003) Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): a quantitative review of published reports. FEMS Microbiol
Ecol 44:3–15
Brooke S, Ross SW (2014) First observations of the cold-water coral Lophelia pertusa in midAtlantic canyons of the USA. Deep Sea Res Part 2 Top Stud Oceanogr 104:245–251
Burke C, Steinberg P, Rusch D et al (2011) Bacterial community assembly based on functional
genes rather than species. Proc Natl Acad Sci 108:14288–14293
Carson CA, Shear BL, Ellersieck MR (2001) Identification of fecal Escherichia coli from humans
and animals by ribotyping identification of fecal Escherichia coli from humans and animals by
ribotyping. Appl Environ Microbiol 67:1503–1507
Cerdà-Cuéllar M, Blanch AR (2002) Detection and identification of Vibrio scophthalmi in the
intestinal microbiota of fish and evaluation of host specificity. J Appl Microbiol 93:261–268
Chen CP, Tseng CH, Chen CA et al (2011) The dynamics of microbial partnerships in the coral
Isopora palifera. ISME J 5:728–740
Chimetto LA, Brocchi M, Thompson CC et al (2008) Vibrios dominate as culturable nitrogenfixing bacteria of the Brazilian coral Mussismilia hispida. Syst Appl Microbiol 31:312–319
Closek CJ, Sunagawa S, DeSalvo MK et al (2014) Coral transcriptome and bacterial community
profiles reveal distinct Yellow Band Disease states in Orbicella faveolata. ISME J 8:2411–2422
Connell JH (1978) Diversity in tropical rain forests and coral reefs. Science 199:1302–1310
Cook GM, Rothenberger JP, Sikaroodi M et al (2013) A comparison of culture-dependent and
culture- independent techniques used to characterize bacterial communities on healthy and
white plague-diseased corals of the Montastraea annularis species complex. Coral Reefs
32:375–388
Dinsdale EA, Edwards RA, Hall D et al (2008) Functional metagenomic profiling of nine biomes.
Nature 452:629–632
Dobretsov S, Abed RMM, Teplitski M (2013) Mini-review: inhibition of biofouling by marine
microorganisms. Biofouling 29:423–441
Faden M (2008) “Smart-grid” appliances. Front Ecol Environ 6:62–62
Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive Earth’s biogeochemical cycles. Science 320:1034–1039
Fine M, Loya Y (2002) Endolithic algae: an alternative source of photoassimilates during coral
bleaching. Proc R Soc Lond B Biol Sci 269:1205–1210
Fine M, Loya Y (2004) Coral bleaching in a temperate sea: from colony physiology to population ecology. In: Rosenberg E, Loya Y (eds) Coral health and disease. Springer, Heidelberg,
pp 143–156
Fischer SG, Lerman LS (1983) DNA fragments differing by single base-pair substitutions are
separated in denaturing gradient gels: correspondence with melting theory. Proc Natl Acad Sci
U S A 80:1579–1583
Garcia GD, Santos EDO, Sousa GV et al (2016) Metaproteomics reveals metabolic transitions
between healthy and diseased stony coral Mussismilia braziliensis. Mol Ecol 25:4632–4644
Gerner-Smidt P (1992) Ribotyping of the acinetobacter calcoaceticus-Acinetobacter baumannii
complex. J Clin Microbiol 30:2680–2685
Hadfield MG (2011) Biofilms and marine invertebrate larvae: what bacteria produce that larvae use
to choose settlement sites. Annu Rev Mar Sci 3:453–470
Heid C, Stevens J, Livak KJ et al (1996) Real time quantitative PCR. Genome Res 6:986–994
Hills W, Glenn T, Saiki RK, Scharf SJ (1987) 4683195 process for amplifying, detecting, and/orcloning nucleic acid sequences. Biotechnol Adv 5:313
N.P. Patel et al.
Bourne DG, Munn CB (2005) Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef. Environ Microbiol 7:1162–1174
Bourne D, Iida Y, Uthicke S, Smith-Keune C (2008) Changes in coral-associated microbial communities during a bleaching event. ISME J 2112:350–363
Bouvier T, del Giorgio PA (2003) Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): a quantitative review of published reports. FEMS Microbiol
Ecol 44:3–15
Brooke S, Ross SW (2014) First observations of the cold-water coral Lophelia pertusa in midAtlantic canyons of the USA. Deep Sea Res Part 2 Top Stud Oceanogr 104:245–251
Burke C, Steinberg P, Rusch D et al (2011) Bacterial community assembly based on functional
genes rather than species. Proc Natl Acad Sci 108:14288–14293
Carson CA, Shear BL, Ellersieck MR (2001) Identification of fecal Escherichia coli from humans
and animals by ribotyping identification of fecal Escherichia coli from humans and animals by
ribotyping. Appl Environ Microbiol 67:1503–1507
Cerdà-Cuéllar M, Blanch AR (2002) Detection and identification of Vibrio scophthalmi in the
intestinal microbiota of fish and evaluation of host specificity. J Appl Microbiol 93:261–268
Chen CP, Tseng CH, Chen CA et al (2011) The dynamics of microbial partnerships in the coral
Isopora palifera. ISME J 5:728–740
Chimetto LA, Brocchi M, Thompson CC et al (2008) Vibrios dominate as culturable nitrogenfixing bacteria of the Brazilian coral Mussismilia hispida. Syst Appl Microbiol 31:312–319
Closek CJ, Sunagawa S, DeSalvo MK et al (2014) Coral transcriptome and bacterial community
profiles reveal distinct Yellow Band Disease states in Orbicella faveolata. ISME J 8:2411–2422
Connell JH (1978) Diversity in tropical rain forests and coral reefs. Science 199:1302–1310
Cook GM, Rothenberger JP, Sikaroodi M et al (2013) A comparison of culture-dependent and
culture- independent techniques used to characterize bacterial communities on healthy and
white plague-diseased corals of the Montastraea annularis species complex. Coral Reefs
32:375–388
Dinsdale EA, Edwards RA, Hall D et al (2008) Functional metagenomic profiling of nine biomes.
Nature 452:629–632
Dobretsov S, Abed RMM, Teplitski M (2013) Mini-review: inhibition of biofouling by marine
microorganisms. Biofouling 29:423–441
Faden M (2008) “Smart-grid” appliances. Front Ecol Environ 6:62–62
Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive Earth’s biogeochemical cycles. Science 320:1034–1039
Fine M, Loya Y (2002) Endolithic algae: an alternative source of photoassimilates during coral
bleaching. Proc R Soc Lond B Biol Sci 269:1205–1210
Fine M, Loya Y (2004) Coral bleaching in a temperate sea: from colony physiology to population ecology. In: Rosenberg E, Loya Y (eds) Coral health and disease. Springer, Heidelberg,
pp 143–156
Fischer SG, Lerman LS (1983) DNA fragments differing by single base-pair substitutions are
separated in denaturing gradient gels: correspondence with melting theory. Proc Natl Acad Sci
U S A 80:1579–1583
Garcia GD, Santos EDO, Sousa GV et al (2016) Metaproteomics reveals metabolic transitions
between healthy and diseased stony coral Mussismilia braziliensis. Mol Ecol 25:4632–4644
Gerner-Smidt P (1992) Ribotyping of the acinetobacter calcoaceticus-Acinetobacter baumannii
complex. J Clin Microbiol 30:2680–2685
Hadfield MG (2011) Biofilms and marine invertebrate larvae: what bacteria produce that larvae use
to choose settlement sites. Annu Rev Mar Sci 3:453–470
Heid C, Stevens J, Livak KJ et al (1996) Real time quantitative PCR. Genome Res 6:986–994
Hills W, Glenn T, Saiki RK, Scharf SJ (1987) 4683195 process for amplifying, detecting, and/orcloning nucleic acid sequences. Biotechnol Adv 5:313
N.P. Patel et al.