314
Spoerner M, Wichard T, Bachhuber T, Stratmann J, Oertel W (2012) Growth and thallus morphogenesis of Ulva mutabilis (Chlorophyta) depends on a combination of two Bacterial species excreting regulatory factors. J Phycol 48(6):1433–1447. doi:10.1111/j.1529-8817.2012.01231.x
Staufenberger T, Thiel V, Wiese J, Imhoff JF (2008) Phylogenetic analysis of bacteria associated with Laminaria saccharina. FEMS Microbiol Ecol 64(1):65–77.
doi:10.1111/j.1574-6941.2008.00445.x
Subramoni S, Venturi V (2009a) LuxR-family ‘solos’: bachelor sensors/regulators of signalling
molecules. Microbiology 155(Pt 5):1377–1385. doi:10.1099/mic.0.026849-0
Subramoni S, Venturi V (2009b) PpoR is a conserved unpaired LuxR solo of Pseudomonas putida
which binds N-acyl homoserine lactones. BMC Microbiol 9:125. doi:10.1186/1471-2180-9-125
Subramoni S, Florez Salcedo DV, Suarez-Moreno ZR (2015) A bioinformatic survey of distribution, conservation, and probable functions of LuxR solo regulators in bacteria. Front Cell Infect
Microbiol 5:16. doi:10.3389/fcimb.2015.00016
Sun J, Chang EB (2014) Exploring gut microbes in human health and disease: pushing the envelope. Genes Dis 1(2):132–139. doi:10.1016/j.gendis.2014.08.001
Tait K, Joint I, Daykin M, Milton DL, Williams P, Camara M (2005) Disruption of quorum sensing in seawater abolishes attraction of zoospores of the green alga Ulva to bacterial biofilms.
Environ Microbiol 7(2):229–240. doi:10.1111/j.1462-2920.2004.00706.x
Tait K, Williamson H, Atkinson S, Williams P, Camara M, Joint I (2009) Turnover of quorum
sensing signal molecules modulates cross-kingdom signalling. Environ Microbiol 11(7):1792–
1802. doi:10.1111/j.1462-2920.2009.01904.x
Takusagawa F, Kamitori S, Markham GD (1996) Structure and function of S-adenosylmethionine
synthetase: crystal structures of S-adenosylmethionine synthetase with ADP, BrADP, and PPi
at 28 angstroms resolution. Biochemistry 35(8):2586–2596. doi:10.1021/bi952604z
Trindade-Silva AE, Rua C, Silva GG, Dutilh BE, Moreira AP, Edwards RA et al (2012) Taxonomic
and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis.
PLoS One 7(7):e39905. doi:10.1371/journal.pone.0039905
Tujula NA, Crocetti GR, Burke C, Thomas T, Holmstrom C, Kjelleberg S (2010) Variability and
abundance of the epiphytic bacterial community associated with a green marine Ulvacean
alga. ISME J 4(2):301–311. doi:10.1038/ismej.2009.107
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI (2006) An obesityassociated gut microbiome with increased capacity for energy harvest. Nature 444(7122):1027–
1031. doi:10.1038/Nature05414
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI (2007) The human
microbiome project. Nature 449(7164):804–810. doi:10.1038/nature06244
Turner TR, James EK, Poole PS (2013) The plant microbiome. Genome Biol 14(6):209.
doi:10.1186/gb-2013-14-6-209
Twigg MS, Tait K, Williams P, Atkinson S, Camara M (2014) Interference with the germination
and growth of Ulva zoospores by quorum-sensing molecules from Ulva-associated epiphytic
bacteria. Environ Microbiol 16(2):445–453. doi:10.1111/1462-2920.12203
Ursell LK, Knight R (2013) Xenobiotics and the human gut microbiome: metatranscriptomics
reveal the active players. Cell Metab 17(3):317–318. doi:10.1016/j.cmet.2013.02.013
Venturi V, Fuqua C (2013) Chemical signaling between plants and plant-pathogenic bacteria. Annu
Rev Phytopathol 51:17–37. doi:10.1146/annurev-phyto-082712-102239
Visick KL, Foster J, Doino J, McFall-Ngai M, Ruby EG (2000) Vibrio fischeri lux genes play
an important role in colonization and development of the host light organ. J Bacteriol
182(16):4578–4586
Wahl M, Goecke F, Labes A, Dobretsov S, Weinberger F (2012) The second skin: ecological role
of epibiotic biofilms on marine organisms. Front Microbiol 3. doi:10.3389/Fmicb. 2012.00292
Walsh CJ, Guinane CM, O’Toole PW, Cotter PD (2014) Beneficial modulation of the gut microbiota. FEBS Lett 588(22):4120–4130. doi:10.1016/j.febslet. 2014.03.035
Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS (2015) Application of metagenomics in
the human gut microbiome. World J Gastroenterol 21(3):803–814. doi:10.3748/wjg.v21.i3.803
R.P. Singh et al.
Spoerner M, Wichard T, Bachhuber T, Stratmann J, Oertel W (2012) Growth and thallus morphogenesis of Ulva mutabilis (Chlorophyta) depends on a combination of two Bacterial species excreting regulatory factors. J Phycol 48(6):1433–1447. doi:10.1111/j.1529-8817.2012.01231.x
Staufenberger T, Thiel V, Wiese J, Imhoff JF (2008) Phylogenetic analysis of bacteria associated with Laminaria saccharina. FEMS Microbiol Ecol 64(1):65–77.
doi:10.1111/j.1574-6941.2008.00445.x
Subramoni S, Venturi V (2009a) LuxR-family ‘solos’: bachelor sensors/regulators of signalling
molecules. Microbiology 155(Pt 5):1377–1385. doi:10.1099/mic.0.026849-0
Subramoni S, Venturi V (2009b) PpoR is a conserved unpaired LuxR solo of Pseudomonas putida
which binds N-acyl homoserine lactones. BMC Microbiol 9:125. doi:10.1186/1471-2180-9-125
Subramoni S, Florez Salcedo DV, Suarez-Moreno ZR (2015) A bioinformatic survey of distribution, conservation, and probable functions of LuxR solo regulators in bacteria. Front Cell Infect
Microbiol 5:16. doi:10.3389/fcimb.2015.00016
Sun J, Chang EB (2014) Exploring gut microbes in human health and disease: pushing the envelope. Genes Dis 1(2):132–139. doi:10.1016/j.gendis.2014.08.001
Tait K, Joint I, Daykin M, Milton DL, Williams P, Camara M (2005) Disruption of quorum sensing in seawater abolishes attraction of zoospores of the green alga Ulva to bacterial biofilms.
Environ Microbiol 7(2):229–240. doi:10.1111/j.1462-2920.2004.00706.x
Tait K, Williamson H, Atkinson S, Williams P, Camara M, Joint I (2009) Turnover of quorum
sensing signal molecules modulates cross-kingdom signalling. Environ Microbiol 11(7):1792–
1802. doi:10.1111/j.1462-2920.2009.01904.x
Takusagawa F, Kamitori S, Markham GD (1996) Structure and function of S-adenosylmethionine
synthetase: crystal structures of S-adenosylmethionine synthetase with ADP, BrADP, and PPi
at 28 angstroms resolution. Biochemistry 35(8):2586–2596. doi:10.1021/bi952604z
Trindade-Silva AE, Rua C, Silva GG, Dutilh BE, Moreira AP, Edwards RA et al (2012) Taxonomic
and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis.
PLoS One 7(7):e39905. doi:10.1371/journal.pone.0039905
Tujula NA, Crocetti GR, Burke C, Thomas T, Holmstrom C, Kjelleberg S (2010) Variability and
abundance of the epiphytic bacterial community associated with a green marine Ulvacean
alga. ISME J 4(2):301–311. doi:10.1038/ismej.2009.107
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI (2006) An obesityassociated gut microbiome with increased capacity for energy harvest. Nature 444(7122):1027–
1031. doi:10.1038/Nature05414
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI (2007) The human
microbiome project. Nature 449(7164):804–810. doi:10.1038/nature06244
Turner TR, James EK, Poole PS (2013) The plant microbiome. Genome Biol 14(6):209.
doi:10.1186/gb-2013-14-6-209
Twigg MS, Tait K, Williams P, Atkinson S, Camara M (2014) Interference with the germination
and growth of Ulva zoospores by quorum-sensing molecules from Ulva-associated epiphytic
bacteria. Environ Microbiol 16(2):445–453. doi:10.1111/1462-2920.12203
Ursell LK, Knight R (2013) Xenobiotics and the human gut microbiome: metatranscriptomics
reveal the active players. Cell Metab 17(3):317–318. doi:10.1016/j.cmet.2013.02.013
Venturi V, Fuqua C (2013) Chemical signaling between plants and plant-pathogenic bacteria. Annu
Rev Phytopathol 51:17–37. doi:10.1146/annurev-phyto-082712-102239
Visick KL, Foster J, Doino J, McFall-Ngai M, Ruby EG (2000) Vibrio fischeri lux genes play
an important role in colonization and development of the host light organ. J Bacteriol
182(16):4578–4586
Wahl M, Goecke F, Labes A, Dobretsov S, Weinberger F (2012) The second skin: ecological role
of epibiotic biofilms on marine organisms. Front Microbiol 3. doi:10.3389/Fmicb. 2012.00292
Walsh CJ, Guinane CM, O’Toole PW, Cotter PD (2014) Beneficial modulation of the gut microbiota. FEBS Lett 588(22):4120–4130. doi:10.1016/j.febslet. 2014.03.035
Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS (2015) Application of metagenomics in
the human gut microbiome. World J Gastroenterol 21(3):803–814. doi:10.3748/wjg.v21.i3.803
R.P. Singh et al.