310
Bakker MG, Manter DK, Sheflin AM, Weir TL, Vivanco JM (2012) Harnessing the rhizosphere
microbiome through plant breeding and agricultural management. Plant Soil 360(1-2):1–13.
doi:10.1007/s11104-012-1361-x
Bassler BL (1999) How bacteria talk to each other: regulation of gene expression by quorum sensing. Curr Opin Microbiol 2(6):582–587
Bengtsson MM, Ovreas L (2010) Planctomycetes dominate biofilms on surfaces of the kelp
Laminaria hyperborea. BMC Microbiol 10:261. doi:10.1186/1471-2180-10-261
Bengtsson MM, Sjotun K, Lanzen A, Ovreas L (2012) Bacterial diversity in relation to secondary
production and succession on surfaces of the kelp Laminaria hyperborea. ISME J 6(12):2188–
2198. doi:10.1038/ismej.2012.67
Berg G, Smalla K (2009) Plant species and soil type cooperatively shape the structure and
function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 68(1):1–13.
doi:10.1111/j.1574-6941. 2009.00654.x
Bodini SF, Manfredini S, Epp M, Valentini S, Santori F (2009) Quorum sensing inhibition activity of garlic extract and p-coumaric acid. Lett Appl Microbiol 49(5):551–555.
doi:10.1111/j.1472-765X.2009.02704.x
Bondoso J, Balague V, Gasol JM, Lage OM (2014) Community composition of the
Planctomycetes associated with different macroalgae. FEMS Microbiol Ecol 88(3):445–456.
doi:10.1111/1574-6941.12258
Burke C, Steinberg P, Rusch D, Kjelleberg S, Thomas T (2011a) Bacterial community assembly
based on functional genes rather than species. Proc Natl Acad Sci U S A 108(34):14288–
14293. doi:10.1073/pnas.1101591108
Burke C, Thomas T, Lewis M, Steinberg P, Kjelleberg S (2011b) Composition, uniqueness and
variability of the epiphytic bacterial community of the green alga Ulva australis. ISME
J 5(4):590–600. doi:10.1038/ismej.2010.164
Burr FA, West JA (1971) Protein bodies in Bryopsis hypnoides: their relationship to wound-healing
and branch septum development. J Ultrastruct Res 35(5):476–498
Byrne CS, Chambers ES, Morrison DJ, Frost G (2015) The role of short chain fatty acids in appetite regulation and energy homeostasis. Int J Obes 39(9):1331–1338. doi:10.1038/ijo. 2015.84
Campbell AH, Harder T, Nielsen S, Kjelleberg S, Steinberg PD (2011) Climate change and
disease: bleaching of a chemically defended seaweed. Glob Chang Biol 17(9):2958–2970.
doi:10.1111/j.1365-2486.2011.02456.x
Campbell AH, Marzinelli EM, Gelber J, Steinberg PD (2015) Spatial variability of microbial
assemblages associated with a dominant habitat-forming seaweed. Front Microbiol 6:230.
doi:10.3389/fmicb.2015.00230
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N et al (2012) Ultra-highthroughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME
J 6(8):1621–1624. doi:10.1038/ismej.2012.8
Cenit MC, Matzaraki V, Tigchelaar EF, Zhernakova A (2014) Rapidly expanding knowledge on the
role of the gut microbiome in health and disease. Biochim Biophys Acta 1842(10):1981–1992.
doi:10.1016/j.bbadis.2014.05.023
Chisholm JRM, Dauga C, Ageron E, Grimont PAD, Jaubert JM (1996) Roots in mixotrophic algae.
Nature 381(6583):565–565. doi:10.1038/381565b0
Cray JA, Bell AN, Bhaganna P, Mswaka AY, Timson DJ, Hallsworth JE (2013) The biology
of habitat dominance; can microbes behave as weeds? Microb Biotechnol 6(5):453–492.
doi:10.1111/1751-7915.12027
de Oliveira LS, Gregoracci GB, Silva GG, Salgado LT, Filho GA, Alves-Ferreira M et al
(2012) Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae,
Rhodophyta) and its microbiome. BMC Genomics 13:487. doi:10.1186/1471-2164-13-487
Ding X, Peng XJ, Jin BS, Xiao M, Chen JK, Li B et al (2015) Spatial distribution of bacterial communities driven by multiple environmental factors in a beach wetland of the largest freshwater
lake in China. Front Microbiol 6:129. doi:10.3389/fmicb.2015.00129
Dittami SM, Eveillard D, Tonon T (2014) A metabolic approach to study algal-bacterial interactions in changing environments. Mol Ecol 23(7):1656–1660. doi:10.1111/mec.12670
R.P. Singh et al.
Bakker MG, Manter DK, Sheflin AM, Weir TL, Vivanco JM (2012) Harnessing the rhizosphere
microbiome through plant breeding and agricultural management. Plant Soil 360(1-2):1–13.
doi:10.1007/s11104-012-1361-x
Bassler BL (1999) How bacteria talk to each other: regulation of gene expression by quorum sensing. Curr Opin Microbiol 2(6):582–587
Bengtsson MM, Ovreas L (2010) Planctomycetes dominate biofilms on surfaces of the kelp
Laminaria hyperborea. BMC Microbiol 10:261. doi:10.1186/1471-2180-10-261
Bengtsson MM, Sjotun K, Lanzen A, Ovreas L (2012) Bacterial diversity in relation to secondary
production and succession on surfaces of the kelp Laminaria hyperborea. ISME J 6(12):2188–
2198. doi:10.1038/ismej.2012.67
Berg G, Smalla K (2009) Plant species and soil type cooperatively shape the structure and
function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 68(1):1–13.
doi:10.1111/j.1574-6941. 2009.00654.x
Bodini SF, Manfredini S, Epp M, Valentini S, Santori F (2009) Quorum sensing inhibition activity of garlic extract and p-coumaric acid. Lett Appl Microbiol 49(5):551–555.
doi:10.1111/j.1472-765X.2009.02704.x
Bondoso J, Balague V, Gasol JM, Lage OM (2014) Community composition of the
Planctomycetes associated with different macroalgae. FEMS Microbiol Ecol 88(3):445–456.
doi:10.1111/1574-6941.12258
Burke C, Steinberg P, Rusch D, Kjelleberg S, Thomas T (2011a) Bacterial community assembly
based on functional genes rather than species. Proc Natl Acad Sci U S A 108(34):14288–
14293. doi:10.1073/pnas.1101591108
Burke C, Thomas T, Lewis M, Steinberg P, Kjelleberg S (2011b) Composition, uniqueness and
variability of the epiphytic bacterial community of the green alga Ulva australis. ISME
J 5(4):590–600. doi:10.1038/ismej.2010.164
Burr FA, West JA (1971) Protein bodies in Bryopsis hypnoides: their relationship to wound-healing
and branch septum development. J Ultrastruct Res 35(5):476–498
Byrne CS, Chambers ES, Morrison DJ, Frost G (2015) The role of short chain fatty acids in appetite regulation and energy homeostasis. Int J Obes 39(9):1331–1338. doi:10.1038/ijo. 2015.84
Campbell AH, Harder T, Nielsen S, Kjelleberg S, Steinberg PD (2011) Climate change and
disease: bleaching of a chemically defended seaweed. Glob Chang Biol 17(9):2958–2970.
doi:10.1111/j.1365-2486.2011.02456.x
Campbell AH, Marzinelli EM, Gelber J, Steinberg PD (2015) Spatial variability of microbial
assemblages associated with a dominant habitat-forming seaweed. Front Microbiol 6:230.
doi:10.3389/fmicb.2015.00230
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N et al (2012) Ultra-highthroughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME
J 6(8):1621–1624. doi:10.1038/ismej.2012.8
Cenit MC, Matzaraki V, Tigchelaar EF, Zhernakova A (2014) Rapidly expanding knowledge on the
role of the gut microbiome in health and disease. Biochim Biophys Acta 1842(10):1981–1992.
doi:10.1016/j.bbadis.2014.05.023
Chisholm JRM, Dauga C, Ageron E, Grimont PAD, Jaubert JM (1996) Roots in mixotrophic algae.
Nature 381(6583):565–565. doi:10.1038/381565b0
Cray JA, Bell AN, Bhaganna P, Mswaka AY, Timson DJ, Hallsworth JE (2013) The biology
of habitat dominance; can microbes behave as weeds? Microb Biotechnol 6(5):453–492.
doi:10.1111/1751-7915.12027
de Oliveira LS, Gregoracci GB, Silva GG, Salgado LT, Filho GA, Alves-Ferreira M et al
(2012) Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae,
Rhodophyta) and its microbiome. BMC Genomics 13:487. doi:10.1186/1471-2164-13-487
Ding X, Peng XJ, Jin BS, Xiao M, Chen JK, Li B et al (2015) Spatial distribution of bacterial communities driven by multiple environmental factors in a beach wetland of the largest freshwater
lake in China. Front Microbiol 6:129. doi:10.3389/fmicb.2015.00129
Dittami SM, Eveillard D, Tonon T (2014) A metabolic approach to study algal-bacterial interactions in changing environments. Mol Ecol 23(7):1656–1660. doi:10.1111/mec.12670
R.P. Singh et al.