11
Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE (2013) Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season. New Phytol
198:398–407
Kumar V, Jain M (2015) The CRISPR-Cas system for plant genome editing: advances and opportunities. J Exp Bot 66:47–57
Kumar M, Kuzhiumparambil U, Pernice M, Jiang Z, Ralph PJ (2016) Metabolomics: an emerging
frontier of systems biology in marine macrophytes. Algal Res 16:76–92
Kumar M, Gupta V, Trivedi N, Kumari P, Bijo AJ, Reddy CRK, Jha B (2011) Desiccation induced
oxidative stress and its biochemical responses in intertidal red alga Gracilaria corticata
(Gracilariales, Rhodophyta). Environ Exp Bot 72:194–201
Liu FL, Sun XT, Wang WJ, Liang ZR, Wang FJ (2014) De novo transcriptome analysis-gained
insights into physiological and metabolic characteristics of Sargassum thunbergii (Fucales,
Phaeophyceae). J Appl Phycol 26:1519–1526
Loureiro R, Gachon CM, Rebours C (2015) Seaweed cultivation: potential and challenges of crop
domestication at an unprecedented pace. New Phytol 206:489–492
Mcleod E, Chumra GL, Bouillon S, Salm R, Björk M, Duarte CM et al (2011) A blueprint for blue
carbon: toward an improved understanding of the role of vegetated coastal habitats in sequestering CO 2 . Front Ecol Environ 9:552–560
Mikami K (2013) Current advances in seaweed transformation. In: Baptista GR (ed) An integrated
view of the molecular recognition and toxinology—from analytical procedures to biomedical
applications. InTech Open Access Publisher, Rijeka, pp 323–347
Mikami K (2014) A technical breakthrough close at hand: feasible approaches toward establishing
a gene-targeting genetic transformation system in seaweeds. Front Plant Sci 5:498
Nellemann C, Corcoran E, Duarte CM, Valdés L. De Young C, Fonseca L, Grimsditch G (2009)
Blue Carbon. A Rapid Response Assessment. United Nations Environment Programme, GRIDArendal, www.grida.no
Oertel W, Wichard T, Weissgerber A (2015) Transformation of Ulva mutabilis (Chlorophyta) by
vector plasmids integrating into the genome. J Phycol 51:963–979
Oliveira LS, Tschoeke DA, Oliveira AS, Hill LJ, Paradas WC, Salgado LT et al (2015) New insights
on the terpenome of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta).
Mar Drugs 13:879–902
Pearson GA, Hoarau G, Lago-Leston A, Coyer JA, Kube M, Reinhardt R et al (2010) An expressed
sequence tag analysis of the intertidal brown seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in response to abiotic stressors. Mar Biotechnol
12:195–213
Reddy CRK, Jha B, Fujita Y, Ohno M (2008a) Seaweed micropropagation techniques and their
potentials: an overview. J Appl Phycol 20:609–617
Reddy CRK, Gupta MK, Mantri VA, Jha B (2008b) Seaweed protoplasts: status, biotechnological
perspectives and needs. J Appl Phycol 20:619–632
Reddy CRK, Gupta V, Jha B (2010) Developments in biotechnology of red algae. In: Seckbach J,
Chapman DJ (eds) Red algae in the genomic age. Springer, Dordrecht, pp 307–341
Radulovich R, Neori A, Valderrama D, Reddy CRK, Cronin H, Forster J (2015) Farming of seaweeds. In: Tiwari BK, Troy DJ (eds) Seaweed sustainability—food and non-food applications.
Elsevier, Amsterdam
Robinson N, Winberg P, Kirkendale L (2013) Genetic improvement of macroalgae: status to date
and needs for the future. J Appl Phycol 25:703–716
Shan T, Pang S, Li J, Li X (2015) De novo transcriptome analysis of the gametophyte of Undaria
pinnatifida (Phaeophyceae). J Appl Phycol 27:1011–1019
Smolina I, Kollias S, Jueterbock A, Coyer JA, Hoarau G (2016) Variation in thermal stress response
in two populations of the brown seaweed, Fucus distichus, from the Arctic and subarctic intertidal. R Soc Open Sci 3:150429
Sun P, Mao Y, Li G, Cao M, Kong F, Wang L, Bi G (2015) Comparative transcriptome profiling of
Pyropia yezoensis (Ueda) M.S. Hwang & H.G. Choi in response to temperature stresses. BMC
Genomics 16:463
1 Macroalgal Functional Genomics: A Missing Area
Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE (2013) Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season. New Phytol
198:398–407
Kumar V, Jain M (2015) The CRISPR-Cas system for plant genome editing: advances and opportunities. J Exp Bot 66:47–57
Kumar M, Kuzhiumparambil U, Pernice M, Jiang Z, Ralph PJ (2016) Metabolomics: an emerging
frontier of systems biology in marine macrophytes. Algal Res 16:76–92
Kumar M, Gupta V, Trivedi N, Kumari P, Bijo AJ, Reddy CRK, Jha B (2011) Desiccation induced
oxidative stress and its biochemical responses in intertidal red alga Gracilaria corticata
(Gracilariales, Rhodophyta). Environ Exp Bot 72:194–201
Liu FL, Sun XT, Wang WJ, Liang ZR, Wang FJ (2014) De novo transcriptome analysis-gained
insights into physiological and metabolic characteristics of Sargassum thunbergii (Fucales,
Phaeophyceae). J Appl Phycol 26:1519–1526
Loureiro R, Gachon CM, Rebours C (2015) Seaweed cultivation: potential and challenges of crop
domestication at an unprecedented pace. New Phytol 206:489–492
Mcleod E, Chumra GL, Bouillon S, Salm R, Björk M, Duarte CM et al (2011) A blueprint for blue
carbon: toward an improved understanding of the role of vegetated coastal habitats in sequestering CO 2 . Front Ecol Environ 9:552–560
Mikami K (2013) Current advances in seaweed transformation. In: Baptista GR (ed) An integrated
view of the molecular recognition and toxinology—from analytical procedures to biomedical
applications. InTech Open Access Publisher, Rijeka, pp 323–347
Mikami K (2014) A technical breakthrough close at hand: feasible approaches toward establishing
a gene-targeting genetic transformation system in seaweeds. Front Plant Sci 5:498
Nellemann C, Corcoran E, Duarte CM, Valdés L. De Young C, Fonseca L, Grimsditch G (2009)
Blue Carbon. A Rapid Response Assessment. United Nations Environment Programme, GRIDArendal, www.grida.no
Oertel W, Wichard T, Weissgerber A (2015) Transformation of Ulva mutabilis (Chlorophyta) by
vector plasmids integrating into the genome. J Phycol 51:963–979
Oliveira LS, Tschoeke DA, Oliveira AS, Hill LJ, Paradas WC, Salgado LT et al (2015) New insights
on the terpenome of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta).
Mar Drugs 13:879–902
Pearson GA, Hoarau G, Lago-Leston A, Coyer JA, Kube M, Reinhardt R et al (2010) An expressed
sequence tag analysis of the intertidal brown seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in response to abiotic stressors. Mar Biotechnol
12:195–213
Reddy CRK, Jha B, Fujita Y, Ohno M (2008a) Seaweed micropropagation techniques and their
potentials: an overview. J Appl Phycol 20:609–617
Reddy CRK, Gupta MK, Mantri VA, Jha B (2008b) Seaweed protoplasts: status, biotechnological
perspectives and needs. J Appl Phycol 20:619–632
Reddy CRK, Gupta V, Jha B (2010) Developments in biotechnology of red algae. In: Seckbach J,
Chapman DJ (eds) Red algae in the genomic age. Springer, Dordrecht, pp 307–341
Radulovich R, Neori A, Valderrama D, Reddy CRK, Cronin H, Forster J (2015) Farming of seaweeds. In: Tiwari BK, Troy DJ (eds) Seaweed sustainability—food and non-food applications.
Elsevier, Amsterdam
Robinson N, Winberg P, Kirkendale L (2013) Genetic improvement of macroalgae: status to date
and needs for the future. J Appl Phycol 25:703–716
Shan T, Pang S, Li J, Li X (2015) De novo transcriptome analysis of the gametophyte of Undaria
pinnatifida (Phaeophyceae). J Appl Phycol 27:1011–1019
Smolina I, Kollias S, Jueterbock A, Coyer JA, Hoarau G (2016) Variation in thermal stress response
in two populations of the brown seaweed, Fucus distichus, from the Arctic and subarctic intertidal. R Soc Open Sci 3:150429
Sun P, Mao Y, Li G, Cao M, Kong F, Wang L, Bi G (2015) Comparative transcriptome profiling of
Pyropia yezoensis (Ueda) M.S. Hwang & H.G. Choi in response to temperature stresses. BMC
Genomics 16:463
1 Macroalgal Functional Genomics: A Missing Area