218
Basu S, Patil S, Mapleson D, Russo MT, Vitale L, Fevola C, Maumus F, Casotti R, Mock T,
Caccamo M, Montresor M, Sanges R, Ferrante MI (2017) Finding a partner in the ocean:
molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. New
Phytol 215(1):140–156
Bentkowski P, van Oosterhout C, Ashby B, Mock T (2017) The effect of extrinsic mortality on
genome size evolution in prokaryotes. ISME J 11:1011–1018. doi:10.1038/ismej.2016.165
Blattner FR, Plunkett G, Bloch CA et al (1997) The complete genome sequence of Escherichia coli
K-12. Science 277:1453–1462. doi:10.1126/science.277.5331.1453
Bowler C, Allen AE, Badger JH et al (2008) The Phaeodactylum genome reveals the evolutionary
history of diatom genomes. Nature 456:239–244. doi:10.1038/nature07410
Bragg JG, Dutkiewicz S, Jahn O et al (2010) Modeling selective pressures on phytoplankton in the
Global Ocean. PLoS One 5:e9569. doi:10.1371/journal.pone.0009569
Brembu T, Jørstad M, Winge P et al (2011) Genome-wide profiling of responses to cadmium in the
diatom Phaeodactylum tricornutum. Environ Sci Technol 45:7640–7647. doi:10.1021/es2002259
Bult CJ, White O, Olsen GJ et al (1996) Complete genome sequence of the Methanogenic Archaeon,
Methanococcus jannaschii. Science 273:1058–1073. doi:10.1126/science.273.5278.1058
Carvalho RN, Bopp SK, Lettieri T (2011) Transcriptomics responses in marine diatom
Thalassiosira pseudonana exposed to the polycyclic aromatic hydrocarbon Benzo[a]pyrene.
PLoS One 6:e26985. doi:10.1371/journal.pone.0026985
Chang RL, Ghamsari L, Manichaikul A et al (2011) Metabolic network reconstruction of
Chlamydomonas offers insight into light-driven algal metabolism. Mol Syst Biol 7:518.
doi:10.1038/msb.2011.52
Chauton MS, Winge P, Brembu T et al (2013) Gene regulation of carbon fixation, storage, and
utilization in the diatom Phaeodactylum tricornutum acclimated to light/dark cycles. Plant
Physiol 161:1034–1048. doi:10.1104/pp.112.206177
de Vargas C, Audic S, Henry N et al (2015) Eukaryotic plankton diversity in the sunlit ocean.
Science 348:1261605. doi:10.1126/science.1261605
Dufresne A, Salanoubat M, Partensky F et al (2003) Genome sequence of the cyanobacterium
Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad
Sci 100:10020–10025. doi:10.1073/pnas.1733211100
Dyhrman ST, Jenkins BD, Rynearson TA et al (2012) The Transcriptome and proteome of the
diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response. PLoS One
7:e33768. doi:10.1371/journal.pone.0033768
Falkowski PG (1997) Evolution of the nitrogen cycle and its influence on the biological sequestration of CO2 in the ocean. Nature 387:272–275. doi:10.1038/387272a0
Falkowski PG, Barber RT, Smetacek V (1998) Biogeochemical controls and feedbacks on ocean
primary production. Science 281:200–206. doi:10.1126/science.281.5374.200
Fleischmann RD, Adams MD, White O et al (1995) Whole-genome random sequencing and
assembly of Haemophilus influenzae Rd. Science 269:496–512. doi:10.1126/science.7542800
Fraser CM, Casjens S, Huang WM et al (1997) Genomic sequence of a Lyme disease spirochaete,
Borrelia burgdorferi. Nature 390:580–586. doi:10.1038/37551
Fraser CM, Gocayne JD, White O et al (1995) The minimal Gene complement of mycoplasma
genitalium. Science 270:397–404. doi:10.1126/science.270.5235.397
Fraser CM, Norris SJ, Weinstock GM et al (1998) Complete genome sequence of Treponema pallidum, the syphilis spirochete. Science 281:375–388. doi:10.1126/science.281.5375.375
Georgianna DR, Mayfield SP (2012) Exploiting diversity and synthetic biology for the production
of algal biofuels. Nature 488:329–335. doi:10.1038/nature11479
Gilbert JA, Dupont CL (2011) Microbial Metagenomics: beyond the genome. Annu Rev Mar Sci
3:347–371. doi:10.1146/annurev-marine-120709-142811
Goffeau A, Barrell BG, Bussey H et al (1996) Life with 6000 genes. Science 274:546–567.
doi:10.1126/science.274.5287.546
Hennon GMM, Ashworth J, Groussman RD et al (2015) Diatom acclimation to elevated CO2 via
cAMP signalling and coordinated gene expression. Nat Clim Chang 5:761–765. doi:10.1038/
nclimate2683
J. Ashworth
Basu S, Patil S, Mapleson D, Russo MT, Vitale L, Fevola C, Maumus F, Casotti R, Mock T,
Caccamo M, Montresor M, Sanges R, Ferrante MI (2017) Finding a partner in the ocean:
molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. New
Phytol 215(1):140–156
Bentkowski P, van Oosterhout C, Ashby B, Mock T (2017) The effect of extrinsic mortality on
genome size evolution in prokaryotes. ISME J 11:1011–1018. doi:10.1038/ismej.2016.165
Blattner FR, Plunkett G, Bloch CA et al (1997) The complete genome sequence of Escherichia coli
K-12. Science 277:1453–1462. doi:10.1126/science.277.5331.1453
Bowler C, Allen AE, Badger JH et al (2008) The Phaeodactylum genome reveals the evolutionary
history of diatom genomes. Nature 456:239–244. doi:10.1038/nature07410
Bragg JG, Dutkiewicz S, Jahn O et al (2010) Modeling selective pressures on phytoplankton in the
Global Ocean. PLoS One 5:e9569. doi:10.1371/journal.pone.0009569
Brembu T, Jørstad M, Winge P et al (2011) Genome-wide profiling of responses to cadmium in the
diatom Phaeodactylum tricornutum. Environ Sci Technol 45:7640–7647. doi:10.1021/es2002259
Bult CJ, White O, Olsen GJ et al (1996) Complete genome sequence of the Methanogenic Archaeon,
Methanococcus jannaschii. Science 273:1058–1073. doi:10.1126/science.273.5278.1058
Carvalho RN, Bopp SK, Lettieri T (2011) Transcriptomics responses in marine diatom
Thalassiosira pseudonana exposed to the polycyclic aromatic hydrocarbon Benzo[a]pyrene.
PLoS One 6:e26985. doi:10.1371/journal.pone.0026985
Chang RL, Ghamsari L, Manichaikul A et al (2011) Metabolic network reconstruction of
Chlamydomonas offers insight into light-driven algal metabolism. Mol Syst Biol 7:518.
doi:10.1038/msb.2011.52
Chauton MS, Winge P, Brembu T et al (2013) Gene regulation of carbon fixation, storage, and
utilization in the diatom Phaeodactylum tricornutum acclimated to light/dark cycles. Plant
Physiol 161:1034–1048. doi:10.1104/pp.112.206177
de Vargas C, Audic S, Henry N et al (2015) Eukaryotic plankton diversity in the sunlit ocean.
Science 348:1261605. doi:10.1126/science.1261605
Dufresne A, Salanoubat M, Partensky F et al (2003) Genome sequence of the cyanobacterium
Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad
Sci 100:10020–10025. doi:10.1073/pnas.1733211100
Dyhrman ST, Jenkins BD, Rynearson TA et al (2012) The Transcriptome and proteome of the
diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response. PLoS One
7:e33768. doi:10.1371/journal.pone.0033768
Falkowski PG (1997) Evolution of the nitrogen cycle and its influence on the biological sequestration of CO2 in the ocean. Nature 387:272–275. doi:10.1038/387272a0
Falkowski PG, Barber RT, Smetacek V (1998) Biogeochemical controls and feedbacks on ocean
primary production. Science 281:200–206. doi:10.1126/science.281.5374.200
Fleischmann RD, Adams MD, White O et al (1995) Whole-genome random sequencing and
assembly of Haemophilus influenzae Rd. Science 269:496–512. doi:10.1126/science.7542800
Fraser CM, Casjens S, Huang WM et al (1997) Genomic sequence of a Lyme disease spirochaete,
Borrelia burgdorferi. Nature 390:580–586. doi:10.1038/37551
Fraser CM, Gocayne JD, White O et al (1995) The minimal Gene complement of mycoplasma
genitalium. Science 270:397–404. doi:10.1126/science.270.5235.397
Fraser CM, Norris SJ, Weinstock GM et al (1998) Complete genome sequence of Treponema pallidum, the syphilis spirochete. Science 281:375–388. doi:10.1126/science.281.5375.375
Georgianna DR, Mayfield SP (2012) Exploiting diversity and synthetic biology for the production
of algal biofuels. Nature 488:329–335. doi:10.1038/nature11479
Gilbert JA, Dupont CL (2011) Microbial Metagenomics: beyond the genome. Annu Rev Mar Sci
3:347–371. doi:10.1146/annurev-marine-120709-142811
Goffeau A, Barrell BG, Bussey H et al (1996) Life with 6000 genes. Science 274:546–567.
doi:10.1126/science.274.5287.546
Hennon GMM, Ashworth J, Groussman RD et al (2015) Diatom acclimation to elevated CO2 via
cAMP signalling and coordinated gene expression. Nat Clim Chang 5:761–765. doi:10.1038/
nclimate2683
J. Ashworth