159
Kouřil R, Wientjes E, Bultema JB, Croce R, Boekema EJ (2013) High-light vs. Low light: effect
of light acclimation on photosystem II composition and organization in Arabidopsis thaliana.
Biochim Biophys Acta 1827:411–419
Kozaki A, Takeba G (1996) Photorespiration protects C3 plants from photooxidation. Nature
384:557–560
Kramer DM, Evans JR (2011) The importance of energy balance in improving photosynthetic
productivity. Plant Physiol 155:70–78
Külahoglu C, Denton AK, Sommer M (2014) Comparative transcriptome atlases reveal altered
gene expression modules between two Cleomaceae C3 and C4 plant species. Plant Cell
26:3243–3260
Kumar M, Kuzhiumparambila U, Pernice M, Jiang Z, Ralph PJ (2016b) Metabolomics: an emerging frontier of systems biology in marine macrophytes. Algal Res 16:76–92
Kumar M, Padula MP, Davey P, Pernice M, Jiang Z, Sablok G, Contreras-Porcia L, Ralph PJ
(2016a) Proteome analysis reveals extensive light stress-response reprogramming in the seagrass Zostera muelleri (Alismatales, Zosteraceae) metabolism. Front Plant Sci 7:2023
Lakshmanan M, Lim S-H, Mohanty B, Kim JK, Ha S-H, Lee D-Y (2015) Unraveling the lightspecific metabolic and regulatory signatures of rice through combined in silico modeling and
multiomics analysis. Plant Physiol 169:3002–3020
Lamers LPM, Govers LL, Janssen ICJM, Geurts JJM, Van der Welle MEW, Van Katwijk MM
(2013) Sulfide as a soil phytotoxin: a review. Front Plant Sci 4:1–14
Lamote M, Dunton KH (2006) Effects of drift macroalgae and light attenuation on chlorophyll
fluorescence and sediment sulfides in the seagrass Thalassia testudinum. J Exp Mar Biol Ecol
334:174–186
Lan Y, Woodrow IE, Mott KA (1992) Light-dependent changes in ribulose bisphosphate carboxylase activase activity in leaves. Plant Physiol 99:304–309
Larsson C, Axelsson L (1999) Bicarbonate uptake and utilization in marine macroalgae. Eur
J Phycol 34:79–86
Lee H, Golicz AA, Bayer PE, Jiao Y, Tang H, Paterson AH, Edwards D (2016) The genome of a
southern hemisphere seagrass species (Zostera muelleri). Plant Physiol 172:272–283
Lee KS, Dunton KH (1999) Inorganic nitrogen acquisition in the seagrass Thalassia testudinum:
development of a whole-plant nitrogen budget. Limnol Oceanogr 44:1204–1215
Lee K-S, Park SR, Kim YK (2007) Effects of irradiance, temperature and nutrients on growth
dynamics of seagrasses: a review. J Exp Mar Biol Ecol 350:144–175
Lehmann P, Nöthen J, Schmidt von Braun S, Bohnsack MT, Mirus O, Schleiff E (2011) Transitions
of gene expression induced by short-term blue light. Plant Biol 13:349–361
Lepistö A, Kangasjärvi S, Luomala EM, Brader G, Sipari N, Keränen M, Keinänen M, Rintamäki
E (2009) Chloroplast NADPH-thioredoxin reductase interacts with photoperiodic development
in Arabidopsis. Plant Physiol 149:1261–1276
Li J, Li G, Wang H, Deng ZW (2011) Phytochrome signaling mechanisms. Arabidopsis Book
9:e0148
Li X, Zhang G, Sun B, Zhang S, Zhang Y, Liao Y, Zhou Y, Xia X, Shi K, Yu J (2013) Stimulated
leaf dark respiration in tomato in an elevated carbon dioxide atmosphere. Sci Rep 3:3433
Li X-P, Björkman O, Shih C, Grossman AR, Rosenquist M, Jansson S, Niyogi KK (2000) A
pigment-binding protein essential for regulation of photosynthetic light harvesting. Nature
403:391–395
Lin H, Sun T, Xue S, Jiang X (2016a) Heavy metal spatial variation, bioaccumulation, and risk
assessment of Zostera japonica habitat in the Yellow River Estuary, China. Sci Total Environ
541:435–443
Lin H, Sun T, Zhou Y, Zhang X (2016b) Anti-oxidative feedback and biomarkers in the intertidal
seagrass Zostera japonica induced by exposure to copper, lead and cadmium. Mar Pollut Bul
109:325–333
Llagostera I, Cervantes D, Sanmartí N, Romero J, Pérez M (2016) Effects of copper exposure on
photosynthesis and growth of the seagrass Cymodocea nodosa: an experimental assessment.
Bull Environ Contam Toxicol 97:374–379
7 Photobiology of Seagrasses: A Systems Biology Perspective
Kouřil R, Wientjes E, Bultema JB, Croce R, Boekema EJ (2013) High-light vs. Low light: effect
of light acclimation on photosystem II composition and organization in Arabidopsis thaliana.
Biochim Biophys Acta 1827:411–419
Kozaki A, Takeba G (1996) Photorespiration protects C3 plants from photooxidation. Nature
384:557–560
Kramer DM, Evans JR (2011) The importance of energy balance in improving photosynthetic
productivity. Plant Physiol 155:70–78
Külahoglu C, Denton AK, Sommer M (2014) Comparative transcriptome atlases reveal altered
gene expression modules between two Cleomaceae C3 and C4 plant species. Plant Cell
26:3243–3260
Kumar M, Kuzhiumparambila U, Pernice M, Jiang Z, Ralph PJ (2016b) Metabolomics: an emerging frontier of systems biology in marine macrophytes. Algal Res 16:76–92
Kumar M, Padula MP, Davey P, Pernice M, Jiang Z, Sablok G, Contreras-Porcia L, Ralph PJ
(2016a) Proteome analysis reveals extensive light stress-response reprogramming in the seagrass Zostera muelleri (Alismatales, Zosteraceae) metabolism. Front Plant Sci 7:2023
Lakshmanan M, Lim S-H, Mohanty B, Kim JK, Ha S-H, Lee D-Y (2015) Unraveling the lightspecific metabolic and regulatory signatures of rice through combined in silico modeling and
multiomics analysis. Plant Physiol 169:3002–3020
Lamers LPM, Govers LL, Janssen ICJM, Geurts JJM, Van der Welle MEW, Van Katwijk MM
(2013) Sulfide as a soil phytotoxin: a review. Front Plant Sci 4:1–14
Lamote M, Dunton KH (2006) Effects of drift macroalgae and light attenuation on chlorophyll
fluorescence and sediment sulfides in the seagrass Thalassia testudinum. J Exp Mar Biol Ecol
334:174–186
Lan Y, Woodrow IE, Mott KA (1992) Light-dependent changes in ribulose bisphosphate carboxylase activase activity in leaves. Plant Physiol 99:304–309
Larsson C, Axelsson L (1999) Bicarbonate uptake and utilization in marine macroalgae. Eur
J Phycol 34:79–86
Lee H, Golicz AA, Bayer PE, Jiao Y, Tang H, Paterson AH, Edwards D (2016) The genome of a
southern hemisphere seagrass species (Zostera muelleri). Plant Physiol 172:272–283
Lee KS, Dunton KH (1999) Inorganic nitrogen acquisition in the seagrass Thalassia testudinum:
development of a whole-plant nitrogen budget. Limnol Oceanogr 44:1204–1215
Lee K-S, Park SR, Kim YK (2007) Effects of irradiance, temperature and nutrients on growth
dynamics of seagrasses: a review. J Exp Mar Biol Ecol 350:144–175
Lehmann P, Nöthen J, Schmidt von Braun S, Bohnsack MT, Mirus O, Schleiff E (2011) Transitions
of gene expression induced by short-term blue light. Plant Biol 13:349–361
Lepistö A, Kangasjärvi S, Luomala EM, Brader G, Sipari N, Keränen M, Keinänen M, Rintamäki
E (2009) Chloroplast NADPH-thioredoxin reductase interacts with photoperiodic development
in Arabidopsis. Plant Physiol 149:1261–1276
Li J, Li G, Wang H, Deng ZW (2011) Phytochrome signaling mechanisms. Arabidopsis Book
9:e0148
Li X, Zhang G, Sun B, Zhang S, Zhang Y, Liao Y, Zhou Y, Xia X, Shi K, Yu J (2013) Stimulated
leaf dark respiration in tomato in an elevated carbon dioxide atmosphere. Sci Rep 3:3433
Li X-P, Björkman O, Shih C, Grossman AR, Rosenquist M, Jansson S, Niyogi KK (2000) A
pigment-binding protein essential for regulation of photosynthetic light harvesting. Nature
403:391–395
Lin H, Sun T, Xue S, Jiang X (2016a) Heavy metal spatial variation, bioaccumulation, and risk
assessment of Zostera japonica habitat in the Yellow River Estuary, China. Sci Total Environ
541:435–443
Lin H, Sun T, Zhou Y, Zhang X (2016b) Anti-oxidative feedback and biomarkers in the intertidal
seagrass Zostera japonica induced by exposure to copper, lead and cadmium. Mar Pollut Bul
109:325–333
Llagostera I, Cervantes D, Sanmartí N, Romero J, Pérez M (2016) Effects of copper exposure on
photosynthesis and growth of the seagrass Cymodocea nodosa: an experimental assessment.
Bull Environ Contam Toxicol 97:374–379
7 Photobiology of Seagrasses: A Systems Biology Perspective