52
Y. Kumazawa et al.
Ota T, Nei M (1994) Estimation of the number of amino acid substitutions per site when the
substitution rate varies among sites. J Mol Evol 38:642-643
Patterson C (1993) An overview of the early fossil record of acanthomorphs. Bull Mar Sci
52:29-59
Rosen DE (1982) Teleostean interrelationships, morphological function and evolutionary
inference. Am Zool 22:261-273
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing
phylogenetic trees. Mol Bioi Evol 4:406-425
Smith AG, Smith DG, Funnell BM (1994) Atlas of Mesozoic and Cenozoic coastlines. Cambridge Univ Press, New York
Stiassny MU (1991) Phylogenetic intrarelationships of the family Cichlidae: an overview.
In: Keenleyside MHA (Ed) Cichlid fishes: behaviour, ecology and evolution. Chapman
and Hall, London, pp 1-35
Stiassny MU, Meyer A (1999) Cichlids of the rift lakes. Sci Am 280:64-69
Streelman JT, Karl SA (1997) Reconstructing labroid evolution using single-copy nuclear
DNA. Proc Roy Soc Lond Bioi Sci 264:1011-1020
Streelman JT, Zardoya R, Meyer A, Karl SA (1998) Multilocus phylogeny of cichlid fishes
(Pisces: Perciformes): evolutionary comparison of microsatellite and single-copy nuclear
loci. Mol Bioi EvoI15:798-808
Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum-likelihood method
for reconstructing tree topologies. Mol Bioi Evol 13:964-969
Stiltmann H, Mayer WE, Figueroa F, Tichy H, Klein J (1995) Phylogenetic analysis of cichlid
fishes using nuclear DNA markers. Mol Bioi EvoI12:1033-1047
Takahashi K, Terai Y, Nishida M, Okada N (1998) A novel family of short interspersed
repetitive elements (SINEs) from cichlids: the patterns of insertion of SINEs at
orthologous loci support the proposed monophyly of four major groups of cichlid fishes
in Lake Tanganyika. Mol Bioi Evol 15:391-407
Takezaki N, Rzhetsky A, Nei M (1995) Phylogenetic test of the molecular clock and linearized trees. Mol Bioi Evol 12:823-833
The Plates Project (1998) Atlas of paleogeographic reconstructions. Plates Progress Report
No 215, Univ Texas Institute for Geophysics Technical Report No 181, 88 pp
Thomas WK, Beckenbach AT (1989) Variation in salmonid mitochondrial DNA: evolution-ary constraints and mechanisms of substitution. J Mol Evol 29:233-245
Tzeng C-S, Hui C-F, Shen S-C, Huang PC (1992) The complete nucleotide sequence of the
Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. Nucleic Acids Res 20:4853-4858
Zardoya R, Meyer A (1997) The complete DNA sequence of the mitochondrial genome of a
"living fossil", the coelacanth (Latimeria chalumnae). Genetics 146:995-1010
Zardoya R, Garrido-Pertierra A, Bautista JM (1995) The complete nucleotide sequence of
the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss. J Mol
EvoI41:942-951
Zardoya R, Vollmer DM, Craddock C, Streelman IT, Karl S, Meyer A (1996) Evolutionary
conservation of microsatellite flanking regions and their use in resolving the phylogeny
of cichlid fishes (Pisces: Perciformes). Proc Roy Soc Lond Bioi Sci 263:1589-1598
Y. Kumazawa et al.
Ota T, Nei M (1994) Estimation of the number of amino acid substitutions per site when the
substitution rate varies among sites. J Mol Evol 38:642-643
Patterson C (1993) An overview of the early fossil record of acanthomorphs. Bull Mar Sci
52:29-59
Rosen DE (1982) Teleostean interrelationships, morphological function and evolutionary
inference. Am Zool 22:261-273
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing
phylogenetic trees. Mol Bioi Evol 4:406-425
Smith AG, Smith DG, Funnell BM (1994) Atlas of Mesozoic and Cenozoic coastlines. Cambridge Univ Press, New York
Stiassny MU (1991) Phylogenetic intrarelationships of the family Cichlidae: an overview.
In: Keenleyside MHA (Ed) Cichlid fishes: behaviour, ecology and evolution. Chapman
and Hall, London, pp 1-35
Stiassny MU, Meyer A (1999) Cichlids of the rift lakes. Sci Am 280:64-69
Streelman JT, Karl SA (1997) Reconstructing labroid evolution using single-copy nuclear
DNA. Proc Roy Soc Lond Bioi Sci 264:1011-1020
Streelman JT, Zardoya R, Meyer A, Karl SA (1998) Multilocus phylogeny of cichlid fishes
(Pisces: Perciformes): evolutionary comparison of microsatellite and single-copy nuclear
loci. Mol Bioi EvoI15:798-808
Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum-likelihood method
for reconstructing tree topologies. Mol Bioi Evol 13:964-969
Stiltmann H, Mayer WE, Figueroa F, Tichy H, Klein J (1995) Phylogenetic analysis of cichlid
fishes using nuclear DNA markers. Mol Bioi EvoI12:1033-1047
Takahashi K, Terai Y, Nishida M, Okada N (1998) A novel family of short interspersed
repetitive elements (SINEs) from cichlids: the patterns of insertion of SINEs at
orthologous loci support the proposed monophyly of four major groups of cichlid fishes
in Lake Tanganyika. Mol Bioi Evol 15:391-407
Takezaki N, Rzhetsky A, Nei M (1995) Phylogenetic test of the molecular clock and linearized trees. Mol Bioi Evol 12:823-833
The Plates Project (1998) Atlas of paleogeographic reconstructions. Plates Progress Report
No 215, Univ Texas Institute for Geophysics Technical Report No 181, 88 pp
Thomas WK, Beckenbach AT (1989) Variation in salmonid mitochondrial DNA: evolution-ary constraints and mechanisms of substitution. J Mol Evol 29:233-245
Tzeng C-S, Hui C-F, Shen S-C, Huang PC (1992) The complete nucleotide sequence of the
Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates. Nucleic Acids Res 20:4853-4858
Zardoya R, Meyer A (1997) The complete DNA sequence of the mitochondrial genome of a
"living fossil", the coelacanth (Latimeria chalumnae). Genetics 146:995-1010
Zardoya R, Garrido-Pertierra A, Bautista JM (1995) The complete nucleotide sequence of
the mitochondrial DNA genome of the rainbow trout, Oncorhynchus mykiss. J Mol
EvoI41:942-951
Zardoya R, Vollmer DM, Craddock C, Streelman IT, Karl S, Meyer A (1996) Evolutionary
conservation of microsatellite flanking regions and their use in resolving the phylogeny
of cichlid fishes (Pisces: Perciformes). Proc Roy Soc Lond Bioi Sci 263:1589-1598