102
D.E. Soltis and P.S. Soltis
Donoghue MJ, Ree RH, Baum DA (1998) Phylogeny and the evolution of flower symmetry
in the Asteridae. Trends Plant Science 3:311-317
Farris JS (1988) Computer program and documentation Hennig 86. Port Jefferson, New
York
Farris JS (1996) 'Jac. Version 4.4.' Swedish Museum of Natural History, Stockholm
Farris JS , Albert VA, Kallersjo AM, Lipscomb D, Kluge AG (1996) Parsimony jackknifing
outperforms neighbor-joining. Cladistics 12:99-124
Felsenstein J (1978a) The number of evolutionary trees. Syst Zoo I 27:27-33
Felsenstein J (1978b) Cases in which parsimony or compatibility methods will be positively
misleading. Syst Zool 27:401-410
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap.
Evolution 39:783-791
Goloboff P (1993) Pee-Wee and NONA. Computer programs and documentation. New Yark
Graur DL, Duret L, Gouy M (1996) Phylogenetic position of the order Lagomorpha (rabbits,
hares and allies). Nature 379:333-335
Graybeal A (1998) Is it better to add taxa or characters to a difficult phylogenetic problem?
Syst Bioi 47:9-17
Hillis DM (1996) Inferring complex phylogenies. Nature 383:130
Hillis DM, Huelsenbeck JP, Swofford DL (1994) Hobgoblin of phylogenetics? Nature
369:363-364
Kallersjo M, Farris JS, Chase MW, Bremer B, Fay MF, Humphries CJ, Petersen G, Seberg
0, Bremer K (in press) Simultaneous parsimony jackknife analysis of 2538 rbeL DNA
sequences reveals support for major clades of green plants, land plants, seed plants and
tlowering plants. Plant Syst Evol
Kenrick P, Crane PR (1997) The origin and early diversification of land plants. Smithsonian
Institution Press, Washington, DC
Kim J (1996) General inconsistency conditions for maximum parsimony: Effects of branch
length and increasing numbers of taxa. Syst Bioi 45:363-374
Mishler BD (1994) Cladistic analysis of molecular and morphological data. Am J Phys
Anthropo 94: 143-156
Mishler BD, Soltis PS, Soltis DE (1998) Compartmentalization in phylogeny reconstruction: philosophy and practice. Technical Report, Symposium on Estimating Large Scale
Phylogenies: Biological, Statistical, and Computational Problems. DIMACS, Princeton,
New Jersey
Mort ME, Soltis PS, Soltis DE, Mabry ML (in press) A comparison of three methods for
estimating internal support on phylogenetic trees. Syst BioI
Nandi OM, Chase MW, Endress PK (1998) A combined cladistic analysis of angiosperms
using rbeL and non-molecular data sets. Ann Mo Bot Gard 85:137- 212.
Olmstead RG, Bremer B, Scott KM, Palmer JD (1993) A parsimony analysis of the Asteridae
sensu lato based on rbeL sequences. Ann Mo Bot Gard 80:700-722
Rice KA, Donoghue MJ, Olmstead RG (1997) Analyzing large data sets: rbeL 500 revisited.
Syst Bioi 46:554-563
Sanderson MJ, Purvis A, Henze C (1998) Phylogenetic supertrees: assembling the trees of
life. Trends Ecol Evol 13:105-109
Savolainen V, Chase MW, Morton CM, Hoot SB, Soltis DE, Bayer C, Fay MF, de Bruijn A,
Sullivan S, Qiu Y-L (in press) Phylogenetics of flowering plants based upon a combined analysis of plastid alpB and rbeL gene sequences. Syst Bioi
D.E. Soltis and P.S. Soltis
Donoghue MJ, Ree RH, Baum DA (1998) Phylogeny and the evolution of flower symmetry
in the Asteridae. Trends Plant Science 3:311-317
Farris JS (1988) Computer program and documentation Hennig 86. Port Jefferson, New
York
Farris JS (1996) 'Jac. Version 4.4.' Swedish Museum of Natural History, Stockholm
Farris JS , Albert VA, Kallersjo AM, Lipscomb D, Kluge AG (1996) Parsimony jackknifing
outperforms neighbor-joining. Cladistics 12:99-124
Felsenstein J (1978a) The number of evolutionary trees. Syst Zoo I 27:27-33
Felsenstein J (1978b) Cases in which parsimony or compatibility methods will be positively
misleading. Syst Zool 27:401-410
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap.
Evolution 39:783-791
Goloboff P (1993) Pee-Wee and NONA. Computer programs and documentation. New Yark
Graur DL, Duret L, Gouy M (1996) Phylogenetic position of the order Lagomorpha (rabbits,
hares and allies). Nature 379:333-335
Graybeal A (1998) Is it better to add taxa or characters to a difficult phylogenetic problem?
Syst Bioi 47:9-17
Hillis DM (1996) Inferring complex phylogenies. Nature 383:130
Hillis DM, Huelsenbeck JP, Swofford DL (1994) Hobgoblin of phylogenetics? Nature
369:363-364
Kallersjo M, Farris JS, Chase MW, Bremer B, Fay MF, Humphries CJ, Petersen G, Seberg
0, Bremer K (in press) Simultaneous parsimony jackknife analysis of 2538 rbeL DNA
sequences reveals support for major clades of green plants, land plants, seed plants and
tlowering plants. Plant Syst Evol
Kenrick P, Crane PR (1997) The origin and early diversification of land plants. Smithsonian
Institution Press, Washington, DC
Kim J (1996) General inconsistency conditions for maximum parsimony: Effects of branch
length and increasing numbers of taxa. Syst Bioi 45:363-374
Mishler BD (1994) Cladistic analysis of molecular and morphological data. Am J Phys
Anthropo 94: 143-156
Mishler BD, Soltis PS, Soltis DE (1998) Compartmentalization in phylogeny reconstruction: philosophy and practice. Technical Report, Symposium on Estimating Large Scale
Phylogenies: Biological, Statistical, and Computational Problems. DIMACS, Princeton,
New Jersey
Mort ME, Soltis PS, Soltis DE, Mabry ML (in press) A comparison of three methods for
estimating internal support on phylogenetic trees. Syst BioI
Nandi OM, Chase MW, Endress PK (1998) A combined cladistic analysis of angiosperms
using rbeL and non-molecular data sets. Ann Mo Bot Gard 85:137- 212.
Olmstead RG, Bremer B, Scott KM, Palmer JD (1993) A parsimony analysis of the Asteridae
sensu lato based on rbeL sequences. Ann Mo Bot Gard 80:700-722
Rice KA, Donoghue MJ, Olmstead RG (1997) Analyzing large data sets: rbeL 500 revisited.
Syst Bioi 46:554-563
Sanderson MJ, Purvis A, Henze C (1998) Phylogenetic supertrees: assembling the trees of
life. Trends Ecol Evol 13:105-109
Savolainen V, Chase MW, Morton CM, Hoot SB, Soltis DE, Bayer C, Fay MF, de Bruijn A,
Sullivan S, Qiu Y-L (in press) Phylogenetics of flowering plants based upon a combined analysis of plastid alpB and rbeL gene sequences. Syst Bioi