125
Chamberlin M, Berg P (1962) Deoxyribonucleic acid-directed synthesis of ribonucleic acid by an
enzyme from Escherichia coli. Proc Natl Acad Sci U S A 48(1):81–94
Chamberlin MJ, Ryan T (1982) Bacteriophage DNA-dependent RNA polymerases. In: Boyer PD
(ed) The enzymes, vol 15. Academic, New York, pp 87–109
Chamberlin M, McGrath J, Waskell L (1970) New RNA polymerase from Escherichia coli infected
with bacteriophage T7. Nature 228(5268):227–231
Chang LM, Bollum FJ (1986) Molecular biology of terminal transferase. CRC Crit Rev Bioeng
21:27–52
Chase JW, Richardson CC (1974) Exonuclease VII of Escherichia coli. Mechanism of action.
J Biol Chem 249:4553–4561
Danna K, Nathans D (1971) Specific cleavage of simian virus 40 DNA by restriction endonuclease
of Hemophilus influenzae. Proc Natl Acad Sci U S A 68:2913
Demple B, Harrison L (1994) Repair of oxidative damage to DNA: enzymology and biology. Annu
Rev Biochem 63:915–948
Desai NA, Shankar V (2003) Single-strand-specific nucleases. FEMS Microbiol Rev 26(5):457–491
Diaz RS, Sabino EC (1998) Accuracy of replication in the polymerase chain reaction. Comparison
between Thermotoga maritima DNA polymerase and Thermus aquaticus DNA polymerase.
Braz J Med Biol Res 31(10):1239–1242
Doherty AJ, Wigley DB (1999) Functional domains of an ATP-dependent DNA ligase. J Mol Biol
285(1):63–71
Doherty AJ, Ashford SR, Subramanya HS, Wigley DB (1996) Bacteriophage T7 DNA ligase overexpression, purification, crystallization, and characterization. J Biol Chem 271:11083–11089
Edmonds M (1982) Poly(A) adding enzymes. In: Boyer PD (ed) The enzymes, vol 15B. Academic,
New York, pp 218–245
Feng H, Dong L, Cao W (2006) Catalytic mechanism of endonuclease v: a catalytic and regulatory
two-metal model. Biochemistry 45(34):10251–10259
Franklin MC, Wang J, Steitz TA (2001) Structure of the replicating complex of a pol alpha family
DNA polymerase. Cell 105:657–667
Fujimura T, Tanaka T, Ohara K, Morioka H, Uesugi S, Ikehara M, Nishikawa S (1990) Secretion
of recombinant ribonuclease T1 into the periplasmic space of Escherichia coli with the aid of
the signal peptide of alkaline phosphatase. FEBS Lett 265(1–2):71–74
Goodwin EC, Rottman FM (1992) The use of RNase H and poly(A) junction oligonucleotides in
the analysis of in vitro polyadenylation reaction products. Nucleic Acids Res 20(4):916
Günther S, Montes M, de DA, del VM, Atencia EA, Sillero A (2002) Thermostable Pyrococcus
furiosus DNA ligase catalyzes the synthesis of (di)nucleoside polyphosphates. Extremophiles
6(1):45–50
Halford SE (1971) Escherichia coli alkaline phosphatase. An analysis of transient kinetics.
Biochem J 125(1):319–327
Ho CK, Van Etten JL, Shuman S (1997) Characterization of an ATP-dependent DNA ligase
encoded by Chlorella virus PBCV-1. J Virol 71(3):1931–1937
Ho CK, Wang LK, Lima CD, Shuman S (2004) Structure and mechanism of RNA ligase. Structure
12:327–339
Hofstetter H, Schambock A, Van Den Berg J, Weissmann C (1976) Specific excision of the inserted
DNA segment from hybrid plasmids constructed by the poly(dA). poly (dT) method. Biochim
Biophys Acta 454:587–591
Hosfield DJ, Guan Y, Haas BJ, Cunningham RP, Tainer JA (1999) Structure of the DNA repair
enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and
three-metal-ion catalysis. Cell 98(3):397–408
Housby JN, Thorbjarnardóttir SH, Jónsson ZO, Southern EM (2000) Optimised ligation of oligonucleotides by thermal ligases: comparison of Thermus scotoductus and Rhodothermus marinus DNA ligases to other thermophilic ligases. Nucleic Acids Res 28(3):e10
Houts GE, Miyagi M, Ellis C, Beard D, Beard JW (1979) Reverse transcriptase from avian myeloblastosis virus. J Virol 29(2):517–522
4 Enzymes as Molecular Tools
Chamberlin M, Berg P (1962) Deoxyribonucleic acid-directed synthesis of ribonucleic acid by an
enzyme from Escherichia coli. Proc Natl Acad Sci U S A 48(1):81–94
Chamberlin MJ, Ryan T (1982) Bacteriophage DNA-dependent RNA polymerases. In: Boyer PD
(ed) The enzymes, vol 15. Academic, New York, pp 87–109
Chamberlin M, McGrath J, Waskell L (1970) New RNA polymerase from Escherichia coli infected
with bacteriophage T7. Nature 228(5268):227–231
Chang LM, Bollum FJ (1986) Molecular biology of terminal transferase. CRC Crit Rev Bioeng
21:27–52
Chase JW, Richardson CC (1974) Exonuclease VII of Escherichia coli. Mechanism of action.
J Biol Chem 249:4553–4561
Danna K, Nathans D (1971) Specific cleavage of simian virus 40 DNA by restriction endonuclease
of Hemophilus influenzae. Proc Natl Acad Sci U S A 68:2913
Demple B, Harrison L (1994) Repair of oxidative damage to DNA: enzymology and biology. Annu
Rev Biochem 63:915–948
Desai NA, Shankar V (2003) Single-strand-specific nucleases. FEMS Microbiol Rev 26(5):457–491
Diaz RS, Sabino EC (1998) Accuracy of replication in the polymerase chain reaction. Comparison
between Thermotoga maritima DNA polymerase and Thermus aquaticus DNA polymerase.
Braz J Med Biol Res 31(10):1239–1242
Doherty AJ, Wigley DB (1999) Functional domains of an ATP-dependent DNA ligase. J Mol Biol
285(1):63–71
Doherty AJ, Ashford SR, Subramanya HS, Wigley DB (1996) Bacteriophage T7 DNA ligase overexpression, purification, crystallization, and characterization. J Biol Chem 271:11083–11089
Edmonds M (1982) Poly(A) adding enzymes. In: Boyer PD (ed) The enzymes, vol 15B. Academic,
New York, pp 218–245
Feng H, Dong L, Cao W (2006) Catalytic mechanism of endonuclease v: a catalytic and regulatory
two-metal model. Biochemistry 45(34):10251–10259
Franklin MC, Wang J, Steitz TA (2001) Structure of the replicating complex of a pol alpha family
DNA polymerase. Cell 105:657–667
Fujimura T, Tanaka T, Ohara K, Morioka H, Uesugi S, Ikehara M, Nishikawa S (1990) Secretion
of recombinant ribonuclease T1 into the periplasmic space of Escherichia coli with the aid of
the signal peptide of alkaline phosphatase. FEBS Lett 265(1–2):71–74
Goodwin EC, Rottman FM (1992) The use of RNase H and poly(A) junction oligonucleotides in
the analysis of in vitro polyadenylation reaction products. Nucleic Acids Res 20(4):916
Günther S, Montes M, de DA, del VM, Atencia EA, Sillero A (2002) Thermostable Pyrococcus
furiosus DNA ligase catalyzes the synthesis of (di)nucleoside polyphosphates. Extremophiles
6(1):45–50
Halford SE (1971) Escherichia coli alkaline phosphatase. An analysis of transient kinetics.
Biochem J 125(1):319–327
Ho CK, Van Etten JL, Shuman S (1997) Characterization of an ATP-dependent DNA ligase
encoded by Chlorella virus PBCV-1. J Virol 71(3):1931–1937
Ho CK, Wang LK, Lima CD, Shuman S (2004) Structure and mechanism of RNA ligase. Structure
12:327–339
Hofstetter H, Schambock A, Van Den Berg J, Weissmann C (1976) Specific excision of the inserted
DNA segment from hybrid plasmids constructed by the poly(dA). poly (dT) method. Biochim
Biophys Acta 454:587–591
Hosfield DJ, Guan Y, Haas BJ, Cunningham RP, Tainer JA (1999) Structure of the DNA repair
enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and
three-metal-ion catalysis. Cell 98(3):397–408
Housby JN, Thorbjarnardóttir SH, Jónsson ZO, Southern EM (2000) Optimised ligation of oligonucleotides by thermal ligases: comparison of Thermus scotoductus and Rhodothermus marinus DNA ligases to other thermophilic ligases. Nucleic Acids Res 28(3):e10
Houts GE, Miyagi M, Ellis C, Beard D, Beard JW (1979) Reverse transcriptase from avian myeloblastosis virus. J Virol 29(2):517–522
4 Enzymes as Molecular Tools