5
Bacteria and Marine Biogeochemistry
202
at the Arctic continental slope. Deep-Sea Research
I, 45: 239-275.
Boetius, A., Ravenschlag, K., Schubert, C.J., Rickert, D.,
Widdel, F., Gieseke, A., Amann, R., Jørgensen, B.B.,
Witte, U. and Pfannkuche, O., 2000. A marine
microbial consortium apparently mediating anaerobic oxidation of methane. Nature, 407: 623-626.
Borowski, W.S., Paull, C.K. and Ussler, W., 1996.
Marine pore-water sulfate profiles indicate in situ
methane flux from underlying gas hydrate. Geology,
24: 655-658.
Boudreau, B.P., 1988. Mass-transport constraints on the
growth of discoidal ferromanganese nodules. American Journal of Science, 288: 777-797.
Boudreau, B.P., 1997. Diagenetic models and their
impletation: modelling transport and reactions in
aquatic sediments. Springer, Berlin, Heidelberg, NY,
414 pp.
Brasier, M.D., Green, O.R., Jephcoat, A.P., Kleppe, A.K.,
van Krankendonk, M.J., Lindsay, J.F., Steele, A. and
Grassineau, N.V., 2002. Questioning the evidence for
Earth’s oldest fossils. Nature, 416: 76-81.
Canfield, D.E., 1993. Organic matter oxidation in
marine sediments. In: Wollast, R., Mackenzie, F.T.
and Chou, L. (eds), Interactions of C, N, P and S
biogeochemical cycles. NATO ASI Series, 14.
Springer, Berlin, Heidelberg, NY, pp. 333-363.
Canfield, D.E., Jørgensen; B.B., Fossing, H., Glud, R.N.,
Gundersen, J., Ramsing, N.B., Thamdrup, B., Hansen,
J.W., Nielsen, L.P. and Hall, P.O.J., 1993b. Pathways
of organic carbon oxidation in three continental
margin sediments. Marine Geology, 113: 27-40.
Canfield, D.E. and Teske, A., 1996. Late Proterozoic
rise in atmospheric oxygen concentration inferred
from phylogenetic and sulphur-isotope studies.
Nature, 382: 127-132.
Canfield, D.E., Kristensen, E. and Thamdrup, B., 2005.
Aquatic Geomicrobiology. Elsevier, San Diego, 640
p p .
Christensen, D., 1984. Determination of substrates
oxidized by sulfate reduction in intact cores of
marine sediments. Limnology and Oceanography,
29: 189-192.
Chrost, R.J., 1991. Microbial enzymes in aquatic
environments. Springer, Berlin, Heidelberg, NY, 317 pp.
Coleman, M.L., Hedrick, D.B., Lovley, D.R., White,
D.C. and Pye, K., 1993. Reduction of Fe(III) in
sediments by sulphate-reducing bacteria. Nature,
361: 436-438.
Conrad, R., Schink, B. and Phelps, T.J., 1986.
Thermodynamics of H2-consuming and H2-producing
metabolic reactions in diverse methanogenic environments under in situ conditions. FEMS Microbiology
Ecology, 38: 353-360.
Cypionka, H., 1994. Novel metabolic capacities of
sulfate-reducing bacteria, and their activities in
microbial mats. In: Stal, L.J. and Caumette, P.(eds),
Microbial mats, NATO ASI Series, 35, Springer,
Berlin, Heidelberg, NY, pp. 367-376.
Dannenberg, S., Kroder, M., Dilling, W. and Cypionka,
H., 1992. Oxidation of H2, organic compounds and
inorganic sulfur compounds coupled to reduction of
O2 or nitrate by sulfate-reducing bacteria. Archives
of Microbiology, 158: 93-99.
DeLong, E.F., Franks, D.G., Yayanos, A.A., 1997.
Evolutionary relationships of cultivated psychrophilic
and barophilic deep-sea bacteria. Applied and
Environmental Microbiology 63: 2105-2108.
D’Hondt, S.L., Jørgensen, B.B., Miller, D.J., et al.,
2003. Proceedings of the Ocean Drilling Program,
Initial Reports, 201 [CD-ROM]. Available from:
Ocean Drilling Program, Texas A&M University,
College Station TX 77845-9547, USA.
D’Hondt, S., Jørgensen, B.B., Miller, D.J., Batzke, A.,
Blake, R., Cragg, B.A., Cypionka, H., Dickens, G.R.,
Ferdelman, T., Hinrichs, K.-U., Holm, N.G., Mitterer,
R., Spivack, A., Wang, G., Bekins, B., Engelen, B.,
Ford, K., Gettemy, G., Rutherford, S.D., Sass, H.,
Skilbeck, C.G., Aiello, I.W., Guèrin, G., House, C.H.,
Inagaki, F., Meister, P., Naehr, T., Niitsuma, S.,
Parkes, R.J., Schippers, A., Smith, D.C., Teske, A.,
Wiegel, J., Padilla, C.N. and Acosta, J.L.S., 2004.
Distributions of microbial activities in deep
subseafloor sediments. Science, 306: 2216-2221.
Ehrenreich, A. and Widdel, F., 1994. Anaerobic
oxidation of ferrous iron by purple bacteria, a new
type of phototrophic metabolism. Applied and
Environmental Microbiology, 60: 4517-4526.
Ehrlich, H.L., 1996. Geomicrobiology. Marcel Dekker,
NY, 719 pp.
Fenchel, T.M. and Jørgensen, B.B., 1977. Detritus food
chains of aquatic ecosystems: The role of bacteria.
In: Alexander, M. (ed), Advances in Microbial
Ecology, 1, Plenum Press, NY, pp. 1-58.
Fenchel, T., King, G.M. and Blackburn, T.H., 1998.
Bacterial biogeochemistry: The ecophysiology of
mineral cycling. Academic Press, London, 307 pp.
Fossing, H. and Jørgensen, B.B., 1989. Measurement of
bacterial sulfate reduction in sediments: evaluation
of a single-step chromium reduction method.
Biogeochemistry, 8: 205-222.
Fossing, H., Thode-Andersen, S. and Jørgensen, B.B.,
1992. Sulfur isotope exchange between 35S-labeled
inorganic sulfur compounds in anoxic marine
sediments. Marine Chemistry, 38: 117-132.
Fossing, H., Gallardo, V.A., Jørgensen, B.B., Hüttel, M.,
Nielsen, L.P., Schulz, H., Canfield, D.E., Forster, S.,
Glud, R.N., Gundersen, J.K., Küfer, J., Ramsing, N.B.,
Teske, A., Thamdrup, B. and Ulloa, O., 1995. Concentration and transport of nitrate by the mat-forming
sulphur bacterium Thioploca. Nature, 374: 713-715.
Fossing, H., 1995. 35S-radiolabeling to probe biogeochemical cycling of sulfur. In:. Vairavamurthy, M.A
and. Schoonen, M.A.A (eds), Geochemical transformations of sedimentary sulfur. ACS Symposium
Series, 612, American Chemical Society, Washington, DC, pp. 348-364.
Froelich, P.N., Klinkhammer, G.P., Bender, M.L., Luedtke,
N.A., Heath, G.R., Cullen, D., Dauphin, P., Hammond,
Bacteria and Marine Biogeochemistry
202
at the Arctic continental slope. Deep-Sea Research
I, 45: 239-275.
Boetius, A., Ravenschlag, K., Schubert, C.J., Rickert, D.,
Widdel, F., Gieseke, A., Amann, R., Jørgensen, B.B.,
Witte, U. and Pfannkuche, O., 2000. A marine
microbial consortium apparently mediating anaerobic oxidation of methane. Nature, 407: 623-626.
Borowski, W.S., Paull, C.K. and Ussler, W., 1996.
Marine pore-water sulfate profiles indicate in situ
methane flux from underlying gas hydrate. Geology,
24: 655-658.
Boudreau, B.P., 1988. Mass-transport constraints on the
growth of discoidal ferromanganese nodules. American Journal of Science, 288: 777-797.
Boudreau, B.P., 1997. Diagenetic models and their
impletation: modelling transport and reactions in
aquatic sediments. Springer, Berlin, Heidelberg, NY,
414 pp.
Brasier, M.D., Green, O.R., Jephcoat, A.P., Kleppe, A.K.,
van Krankendonk, M.J., Lindsay, J.F., Steele, A. and
Grassineau, N.V., 2002. Questioning the evidence for
Earth’s oldest fossils. Nature, 416: 76-81.
Canfield, D.E., 1993. Organic matter oxidation in
marine sediments. In: Wollast, R., Mackenzie, F.T.
and Chou, L. (eds), Interactions of C, N, P and S
biogeochemical cycles. NATO ASI Series, 14.
Springer, Berlin, Heidelberg, NY, pp. 333-363.
Canfield, D.E., Jørgensen; B.B., Fossing, H., Glud, R.N.,
Gundersen, J., Ramsing, N.B., Thamdrup, B., Hansen,
J.W., Nielsen, L.P. and Hall, P.O.J., 1993b. Pathways
of organic carbon oxidation in three continental
margin sediments. Marine Geology, 113: 27-40.
Canfield, D.E. and Teske, A., 1996. Late Proterozoic
rise in atmospheric oxygen concentration inferred
from phylogenetic and sulphur-isotope studies.
Nature, 382: 127-132.
Canfield, D.E., Kristensen, E. and Thamdrup, B., 2005.
Aquatic Geomicrobiology. Elsevier, San Diego, 640
p p .
Christensen, D., 1984. Determination of substrates
oxidized by sulfate reduction in intact cores of
marine sediments. Limnology and Oceanography,
29: 189-192.
Chrost, R.J., 1991. Microbial enzymes in aquatic
environments. Springer, Berlin, Heidelberg, NY, 317 pp.
Coleman, M.L., Hedrick, D.B., Lovley, D.R., White,
D.C. and Pye, K., 1993. Reduction of Fe(III) in
sediments by sulphate-reducing bacteria. Nature,
361: 436-438.
Conrad, R., Schink, B. and Phelps, T.J., 1986.
Thermodynamics of H2-consuming and H2-producing
metabolic reactions in diverse methanogenic environments under in situ conditions. FEMS Microbiology
Ecology, 38: 353-360.
Cypionka, H., 1994. Novel metabolic capacities of
sulfate-reducing bacteria, and their activities in
microbial mats. In: Stal, L.J. and Caumette, P.(eds),
Microbial mats, NATO ASI Series, 35, Springer,
Berlin, Heidelberg, NY, pp. 367-376.
Dannenberg, S., Kroder, M., Dilling, W. and Cypionka,
H., 1992. Oxidation of H2, organic compounds and
inorganic sulfur compounds coupled to reduction of
O2 or nitrate by sulfate-reducing bacteria. Archives
of Microbiology, 158: 93-99.
DeLong, E.F., Franks, D.G., Yayanos, A.A., 1997.
Evolutionary relationships of cultivated psychrophilic
and barophilic deep-sea bacteria. Applied and
Environmental Microbiology 63: 2105-2108.
D’Hondt, S.L., Jørgensen, B.B., Miller, D.J., et al.,
2003. Proceedings of the Ocean Drilling Program,
Initial Reports, 201 [CD-ROM]. Available from:
Ocean Drilling Program, Texas A&M University,
College Station TX 77845-9547, USA.
D’Hondt, S., Jørgensen, B.B., Miller, D.J., Batzke, A.,
Blake, R., Cragg, B.A., Cypionka, H., Dickens, G.R.,
Ferdelman, T., Hinrichs, K.-U., Holm, N.G., Mitterer,
R., Spivack, A., Wang, G., Bekins, B., Engelen, B.,
Ford, K., Gettemy, G., Rutherford, S.D., Sass, H.,
Skilbeck, C.G., Aiello, I.W., Guèrin, G., House, C.H.,
Inagaki, F., Meister, P., Naehr, T., Niitsuma, S.,
Parkes, R.J., Schippers, A., Smith, D.C., Teske, A.,
Wiegel, J., Padilla, C.N. and Acosta, J.L.S., 2004.
Distributions of microbial activities in deep
subseafloor sediments. Science, 306: 2216-2221.
Ehrenreich, A. and Widdel, F., 1994. Anaerobic
oxidation of ferrous iron by purple bacteria, a new
type of phototrophic metabolism. Applied and
Environmental Microbiology, 60: 4517-4526.
Ehrlich, H.L., 1996. Geomicrobiology. Marcel Dekker,
NY, 719 pp.
Fenchel, T.M. and Jørgensen, B.B., 1977. Detritus food
chains of aquatic ecosystems: The role of bacteria.
In: Alexander, M. (ed), Advances in Microbial
Ecology, 1, Plenum Press, NY, pp. 1-58.
Fenchel, T., King, G.M. and Blackburn, T.H., 1998.
Bacterial biogeochemistry: The ecophysiology of
mineral cycling. Academic Press, London, 307 pp.
Fossing, H. and Jørgensen, B.B., 1989. Measurement of
bacterial sulfate reduction in sediments: evaluation
of a single-step chromium reduction method.
Biogeochemistry, 8: 205-222.
Fossing, H., Thode-Andersen, S. and Jørgensen, B.B.,
1992. Sulfur isotope exchange between 35S-labeled
inorganic sulfur compounds in anoxic marine
sediments. Marine Chemistry, 38: 117-132.
Fossing, H., Gallardo, V.A., Jørgensen, B.B., Hüttel, M.,
Nielsen, L.P., Schulz, H., Canfield, D.E., Forster, S.,
Glud, R.N., Gundersen, J.K., Küfer, J., Ramsing, N.B.,
Teske, A., Thamdrup, B. and Ulloa, O., 1995. Concentration and transport of nitrate by the mat-forming
sulphur bacterium Thioploca. Nature, 374: 713-715.
Fossing, H., 1995. 35S-radiolabeling to probe biogeochemical cycling of sulfur. In:. Vairavamurthy, M.A
and. Schoonen, M.A.A (eds), Geochemical transformations of sedimentary sulfur. ACS Symposium
Series, 612, American Chemical Society, Washington, DC, pp. 348-364.
Froelich, P.N., Klinkhammer, G.P., Bender, M.L., Luedtke,
N.A., Heath, G.R., Cullen, D., Dauphin, P., Hammond,