13 Oscillations in Yeast Glycolysis
223
41. P.K. Maitra, R.W. Estabrook, Fluorometric method for enzymic determination of glycolytic
intermediates. Anal. Biochem. 7(4), 472–484 (1964)
42. T. Male, J. Feder, G.N. Giaever, I. Giaever, Oscillations in yeast observed electrically. Biol.
Rhythm Res. 30(4), 361–370 (1999)
43. A. Minta, R. Tsien, Fluorescent indicators for cytosolic sodium. J. Biol. Chem. 264(32), 19449–
19457 (1989)
44. G. Nicolis, J. Portnow, Chemical oscillations. Chem. Rev. 73(4), 365–384 (1973)
45. G. Nicolis, I. Prigogine, Self-organization in Nonequilibrium Systems: From Dissipative Structures to Order Through Fluctuatons (Wiley, New York, 1977)
46. L.F. Olsen, A.Z. Andersen, A. Lunding, J.C. Brasen, A.K. Poulsen, Regulation of glycolytic
oscillations by mitochondrial and plasma membrane H+-atpases. Biophys. J. 96(9), 3850–3861
(2009)
47. L.F. Olsen, R.P. Stock, L. Bagatolli, Glycolytic oscillations and intracellular K+ concentration
are strongly coupled in the yeast Saccharomyces cerevisiae. Arch. Biochem. Biophys. 681,
108257 (2020)
48. L. Onsager, Reciprocal relations in irreversible processes. I. Phys. Rev. 37(4), 405–426 (1931)
49. L. Onsager, Reciprocal relations in irreversible processes. II. Phys. Rev. 38(12), 2265–2279
(1931)
50. V.C. Özalp, T.R. Pedersen, L.J. Nielsen, L.F. Olsen, Time-resolved measurements of intracellular ATP in the yeast Saccharomyces cerevisiae using a new type of nanobiosensor. J. Biol.
Chem. 285(48), 37579–37588 (2010)
51. T. Parasassi, G. De Stasio, R. Rusch, E. Gratton, A photophysical model for diphenylhexatriene
fluorescence decay in solvents and in phospholipid-vesicles. Biophys. J. 59(2), 466–475 (1991)
52. T. Parasassi, E. Krasnowska, L. Bagatolli, E. Gratton, LAURDAN and PRODAN as polaritysensitive fluorescent membrane probes. J. Fluoresc. 8(4), 365–373 (1998)
53. V.A. Parsegian, R.P. Rand, R.C. Rau, Osmotic stress, crowding, preferential hydration, and
binding: a comparison of perspectives. Proc. Natl. Acad. Sci. USA 97, 3987–3992 (2000)
54. G. Pollack, Cells, Gels and the Engines of Life. (A New, Unifying Approach to Cell Function),
1st edn. (Ebner and Sons, Seattle, 2001)
55. A.K. Poulsen, F.R. Lauritsen, L.F. Olsen, Sustained glycolytic oscillations—no need for
cyanide. FEMS Microbiol. Lett. 236(2), 261–266 (2004)
56. A.K. Poulsen, A.Z. Andersen, J.C. Brasen, A.M. Scharff-Poulsen, L.F. Olsen, Probing glycolytic and membrane potential oscillations in Saccharomyces cerevisiae. Biochemistry 47(28),
7477–7484 (2008)
57. K. Reijenga et al., Control of glycolytic dynamics by hexose transport in Saccharomyces
cerevisiae. Biophys. J. 80(2), 626–634 (2001)
58. P. Richard, The rhythm of yeast. FEMS Microbiol. Rev. 27(4), 547–557 (2003)
59. P. Richard, B. Teusink, M.B. Hemker, K. van Dam, H.V. Westerhoff, Sustained oscillations in
free-energy state and hexose phosphates in yeast. Yeast 12(8), 731–740 (1996)
60. P. Richter, J. Ross, Concentration oscillations and efficiency—glycolysis. Science 211(4483),
715–717 (1981)
61. T.D. Schrøder, V.C. Özalp, A. Lunding, K.D. Jernshøj, L.F. Olsen, An experimental study of
the regulation of glycolytic oscillations in yeast. FEBS J. 280(23), 6033–6044 (2013)
62. W. Stroberg, S. Schnell, Do cellular condensates accelerate biochemical reactions? Lessons
from microdroplet chemistry. Biophys. J. 115(1), 3–8 (2018)
63. B. Teusink et al., Synchronized heat flux oscillations in yeast cell populations. J. Biol. Chem.
271(40), 24442–24448 (1996)
64. H.S. Thoke et al., Tight coupling of metabolic oscillations and intracellular water dynamics in
Saccharomyces cerevisiae. PLoS ONE 10(2), e0117308 (2015)
65. H.S. Thoke, S. Thorsteinsson, R.P. Stock, L.A. Bagatolli, L.F. Olsen, The dynamics of intracellular water constrains glycolytic oscillations in Saccharomyces cerevisiae. Sci. Rep. 7, 16250
(2017)
66. H.S. Thoke et al., Is a constant low-entropy process at the root of glycolytic oscillations? J.
Biol. Phys. 44, 419–431 (2018)
223
41. P.K. Maitra, R.W. Estabrook, Fluorometric method for enzymic determination of glycolytic
intermediates. Anal. Biochem. 7(4), 472–484 (1964)
42. T. Male, J. Feder, G.N. Giaever, I. Giaever, Oscillations in yeast observed electrically. Biol.
Rhythm Res. 30(4), 361–370 (1999)
43. A. Minta, R. Tsien, Fluorescent indicators for cytosolic sodium. J. Biol. Chem. 264(32), 19449–
19457 (1989)
44. G. Nicolis, J. Portnow, Chemical oscillations. Chem. Rev. 73(4), 365–384 (1973)
45. G. Nicolis, I. Prigogine, Self-organization in Nonequilibrium Systems: From Dissipative Structures to Order Through Fluctuatons (Wiley, New York, 1977)
46. L.F. Olsen, A.Z. Andersen, A. Lunding, J.C. Brasen, A.K. Poulsen, Regulation of glycolytic
oscillations by mitochondrial and plasma membrane H+-atpases. Biophys. J. 96(9), 3850–3861
(2009)
47. L.F. Olsen, R.P. Stock, L. Bagatolli, Glycolytic oscillations and intracellular K+ concentration
are strongly coupled in the yeast Saccharomyces cerevisiae. Arch. Biochem. Biophys. 681,
108257 (2020)
48. L. Onsager, Reciprocal relations in irreversible processes. I. Phys. Rev. 37(4), 405–426 (1931)
49. L. Onsager, Reciprocal relations in irreversible processes. II. Phys. Rev. 38(12), 2265–2279
(1931)
50. V.C. Özalp, T.R. Pedersen, L.J. Nielsen, L.F. Olsen, Time-resolved measurements of intracellular ATP in the yeast Saccharomyces cerevisiae using a new type of nanobiosensor. J. Biol.
Chem. 285(48), 37579–37588 (2010)
51. T. Parasassi, G. De Stasio, R. Rusch, E. Gratton, A photophysical model for diphenylhexatriene
fluorescence decay in solvents and in phospholipid-vesicles. Biophys. J. 59(2), 466–475 (1991)
52. T. Parasassi, E. Krasnowska, L. Bagatolli, E. Gratton, LAURDAN and PRODAN as polaritysensitive fluorescent membrane probes. J. Fluoresc. 8(4), 365–373 (1998)
53. V.A. Parsegian, R.P. Rand, R.C. Rau, Osmotic stress, crowding, preferential hydration, and
binding: a comparison of perspectives. Proc. Natl. Acad. Sci. USA 97, 3987–3992 (2000)
54. G. Pollack, Cells, Gels and the Engines of Life. (A New, Unifying Approach to Cell Function),
1st edn. (Ebner and Sons, Seattle, 2001)
55. A.K. Poulsen, F.R. Lauritsen, L.F. Olsen, Sustained glycolytic oscillations—no need for
cyanide. FEMS Microbiol. Lett. 236(2), 261–266 (2004)
56. A.K. Poulsen, A.Z. Andersen, J.C. Brasen, A.M. Scharff-Poulsen, L.F. Olsen, Probing glycolytic and membrane potential oscillations in Saccharomyces cerevisiae. Biochemistry 47(28),
7477–7484 (2008)
57. K. Reijenga et al., Control of glycolytic dynamics by hexose transport in Saccharomyces
cerevisiae. Biophys. J. 80(2), 626–634 (2001)
58. P. Richard, The rhythm of yeast. FEMS Microbiol. Rev. 27(4), 547–557 (2003)
59. P. Richard, B. Teusink, M.B. Hemker, K. van Dam, H.V. Westerhoff, Sustained oscillations in
free-energy state and hexose phosphates in yeast. Yeast 12(8), 731–740 (1996)
60. P. Richter, J. Ross, Concentration oscillations and efficiency—glycolysis. Science 211(4483),
715–717 (1981)
61. T.D. Schrøder, V.C. Özalp, A. Lunding, K.D. Jernshøj, L.F. Olsen, An experimental study of
the regulation of glycolytic oscillations in yeast. FEBS J. 280(23), 6033–6044 (2013)
62. W. Stroberg, S. Schnell, Do cellular condensates accelerate biochemical reactions? Lessons
from microdroplet chemistry. Biophys. J. 115(1), 3–8 (2018)
63. B. Teusink et al., Synchronized heat flux oscillations in yeast cell populations. J. Biol. Chem.
271(40), 24442–24448 (1996)
64. H.S. Thoke et al., Tight coupling of metabolic oscillations and intracellular water dynamics in
Saccharomyces cerevisiae. PLoS ONE 10(2), e0117308 (2015)
65. H.S. Thoke, S. Thorsteinsson, R.P. Stock, L.A. Bagatolli, L.F. Olsen, The dynamics of intracellular water constrains glycolytic oscillations in Saccharomyces cerevisiae. Sci. Rep. 7, 16250
(2017)
66. H.S. Thoke et al., Is a constant low-entropy process at the root of glycolytic oscillations? J.
Biol. Phys. 44, 419–431 (2018)