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Genome sequence of the ubiquitous hydrocarbondegrading marine bacterium Alcanivorax
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natural and engineered microbial communities: biological pathways, chemical reactions, and
novel technologies. Front Microbiol 3:372
Seviour RJ, Mino T, Onuki M (2003) The microbiology of biological phosphorus removal in
activated sludge systems. FEMS Microbiol Rev 27:99–127
Shaw LJ, Nicol GW, Smith Z, Fear J, Prosser JI, Baggs EM (2006) Nitrosospira spp. can produce
nitrous oxide via a nitrifier denitrification pathway. Environ Microbiol 8:214–222
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Alkane hydroxylase homologues in Gram-positive strains. Environ Microbiol 4:676–682
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systems. Curr Opin Biotechnol 13:218–227
Wagner M, Loy A, Nogueira R, Purkhold U, Lee N, Daims H (2002) Microbial community
composition and function in wastewater treatment plants. Antonie Van Leeuwenhoek
81:665–680
Wang W, Shao Z (2012) Genes involved in alkane degradation in the Alcanivorax hongdengensis
strain A-11-3. Appl Microbiol Biotechnol 94:437–448
Wang Y-T, Shen H (1995) Bacterial reduction of hexavalent chromium. J Ind Microbiol
14:159–163. https://doi.org/10.1007/BF01569898
Welker M, Von Döhren H (2006) Cyanobacterial peptides—nature’s own combinatorial biosynthesis. FEMS Microbiol Rev 30:530–563
Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond PL,
VerBerkmoes NC, Banfield JF (2008) Community proteogenomics highlights microbial strain8 Bioinformatics: A New Insight Tool to Deal with Environment Management
183
27:1839–1846
Rosales E, Pazos M, Ángeles Sanromán M (2013) Feasibility of solid-state fermentation using spent
fungi-substrate in the biodegradation of PAHs. CLEAN Soil Air Water 41:610–615
Ross MO, Rosenzweig AC (2016) A tale of two methane monooxygenase. J Biol Inorg Chem 22
(2–3):307–319
Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J et al (2006)
Genome sequence of the ubiquitous hydrocarbondegrading marine bacterium Alcanivorax
borkumensis. Nat Biotechnol 24:997–1004
Schreiber F, Wunderlin P, Udert KM, Wells GF (2012) Nitric oxide and nitrous oxide turnover in
natural and engineered microbial communities: biological pathways, chemical reactions, and
novel technologies. Front Microbiol 3:372
Seviour RJ, Mino T, Onuki M (2003) The microbiology of biological phosphorus removal in
activated sludge systems. FEMS Microbiol Rev 27:99–127
Shaw LJ, Nicol GW, Smith Z, Fear J, Prosser JI, Baggs EM (2006) Nitrosospira spp. can produce
nitrous oxide via a nitrifier denitrification pathway. Environ Microbiol 8:214–222
Shine AM, Shakya VPS, Idnurm A (2015) Phytochelatin synthase is required for tolerating metal
toxicity in a basidiomycete yeast and is a conserved factor involved in metal homeostasis in
fungi. Fungal Biol Biotechnol 2:3. https://doi.org/10.1186/s40694-015-0013-3
Shukla AK, Vishwakarma P, Upadhyay SN, Tripathi AK, Prasana HC, Dubey SK (2009) Biodegradation of trichloroethylene (TCE) by methanotrophic community. Bioresour Technol 100
(9):2469–2474
Silambarasan S, Abraham J (2013) Ecofriendly method for bioremediation of chlorpyrifos from
agricultural soil by novel fungus Aspergillus terreus JAS1. Water Air Soil Pollut 224:1369
Singh BK (2009) Organophosphorus-degrading bacteria: ecology and industrial applications. Nat
Rev Microbiol 7:156–164
Stępniewska Z, Kuźniar A (2013) Endophytic microorganisms–promising applications in bioremediation of greenhouse gases. Appl Microbiol Biotechnol 97(22):9589–9596. https://doi.org/10.
1007/s00253-013-5235-9
Subashchandrabose SR, Ramakrishnan B, Megharaj M, Venkateswarlu K, Naidu R (2013)
Mixotrophic cyanobacteria and microalgae as distinctive biological agents for organic pollutant
degradation. Environ Int 51:59–72. https://doi.org/10.1016/j.envint.2012.10.007
Thiemer B, Andreesen JR, Schräder T (2003) Cloning and characterization of a gene cluster
involved in tetrahydrofuran degradation in Pseudonocardia sp. strain K1. Arch Microbiol 179
(4):266–277
Turlo J (2014) The biotechnology of higher fungi-current state and perspectives. Folia Biol Oecol
10:49–65
van Beilen JB, Smits TH, Whyte LG, Schorcht S, Rothlisberger M, Plaggemeier T et al (2002)
Alkane hydroxylase homologues in Gram-positive strains. Environ Microbiol 4:676–682
Wagner M, Loy A (2002) Bacterial community composition and function in sewage treatment
systems. Curr Opin Biotechnol 13:218–227
Wagner M, Loy A, Nogueira R, Purkhold U, Lee N, Daims H (2002) Microbial community
composition and function in wastewater treatment plants. Antonie Van Leeuwenhoek
81:665–680
Wang W, Shao Z (2012) Genes involved in alkane degradation in the Alcanivorax hongdengensis
strain A-11-3. Appl Microbiol Biotechnol 94:437–448
Wang Y-T, Shen H (1995) Bacterial reduction of hexavalent chromium. J Ind Microbiol
14:159–163. https://doi.org/10.1007/BF01569898
Welker M, Von Döhren H (2006) Cyanobacterial peptides—nature’s own combinatorial biosynthesis. FEMS Microbiol Rev 30:530–563
Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond PL,
VerBerkmoes NC, Banfield JF (2008) Community proteogenomics highlights microbial strain8 Bioinformatics: A New Insight Tool to Deal with Environment Management
183