Lear G, Song B, Gault AG, Polya DA, Lloyd JR (2007) Molecular analysis of arsenate-reducing
bacteria within Cambodian sediments following amendment with acetate. Appl Environ
Microbiol 73:1041–1048
Lee SY, Kim GH, Yun SH, Choi CW, Yi YS, Kim J, Chung YH, Park EC, Kim S II (2016)
Proteogenomic characterization of monocyclic aromatic hydrocarbon degradation pathways in
the aniline degrading bacterium Burkholderia sp K24. PLoS One 11(4):e0154233
Liu D, An Z, Mao Z, Ma L, Lu Z (2015) Enhanced heavy metal tolerance and accumulation by
transgenic sugar beets expressing Streptococcus thermophilus StGCS-GS in the presence of Cd,
Zn and Cu alone or in combination. PLoS One 10:e0128824. https://doi.org/10.1371/journal.
pone.0128824
Lovley DR, Coates JD (1997) Bioremediation of metal contamination. Curr Opin Biotechnol
8:285–289
Lovley DR (2003) Cleaning up with genomics: applying molecular biology to bioremediation. Nat
Rev Microbiol 1:35–44
Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, Rattei T, Damste JS, Spieck E,
Le Paslier D, Daims H (2010) A Nitrospira metagenome illuminates the physiology and
evolution of globally important nitrite-oxidizing bacteria. Proc Natl Acad Sci U S A
107:13479–13484
Ma L, Zhuo R, Liu H, Yu D, Jiang M, Zhang X, Yang Y (2014) Efficient decolorization and
detoxification of the sulfonated azo dye Reactive Orange 16 and simulated textile wastewater
containing Reactive Orange 16 by the white-rot fungus Ganoderma sp. En3 isolated from the
forest of Tzu-chin Mountain in China. Biochem Eng J 82:1–9
Malik A (2004) Metal bioremediation through growing cells. Environ Int 30:261–278
Marco-Urrea E, García-Romera I, Aranda E (2015) Potential of non-ligninolytic fungi in bioremediation of chlorinated and polycyclic aromatic hydrocarbons. N Biotechnol 32(6):620–628
Margot J, Bennati-Granier C, Maillard J, Blánquez P, Barry DA, Holliger C (2013) Bacterial versus
fungal laccase: potential for micropollutant degradation. AMB Express 3:1–30. https://doi.org/
10.1186/2191-0855-3-63
Markou G, Georgakakis D (2011) Cultivation of filamentous cyanobacteria (blue-green algae) in
agro-industrial wastes and wastewaters: a review. Appl Energy 88:3389–3401
Martín HG, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC et al (2006) Metagenomic
analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat
Biotechnol 24:1263–1269
Martins MR, Pereira P, Lima N, Cruz-Morais J (2013) Degradation of Metalaxyl and Folpet by
filamentous fungi isolated from Portuguese (Alentejo) vineyard soils. Arch Environ Contam
Toxicol 65:67–77
Martins TM, Núñez O, Gallart-Ayala H, Leitão MC, Galceran MT, Silva Pereira C (2014) New
branches in the degradation pathway of monochlorocatechols by Aspergillus nidulans: a
metabolomics analysis. J Hazarad Mater 268:264–272
Melton ED, Swanner ED, Behrens S, Schmidt C, Kappler A (2014) The interplay of microbially
mediated and abiotic reactions in the biogeochemical Fe cycle. Nat Rev Microbiol 12:797–808.
https://doi.org/10.1038/nrmicro3347
Meza B, de- Bashan LE, Hernandez JP, Bashan Y (2015b) Accumulation of intra-cellular
polyphosphate in Chlorella vulgaris cells is related to indole-3-acetic acid produced by
Azospirillum brasilense. Res Microbiol 166:399–407
Meza B, de- Bashan LE, Bashan Y (2015a) Involvement of indole-3-acetic acid produced by
Azospirillum brasilense in accumulating intracellular ammonium in Chlorella vulgaris. Res
Microbiol 166:72–83
Mohanty S, Jasmine J, Mukherji S (2013) Practical considerations and challenges involved in
surfactant enhanced bioremediation of oil. Biomed Res Int 2013:328608
Morales SE, Holben WE (2011) Linking bacterial identities and ecosystem processes: can ‘omic’
analyses be more than the sum of their parts? FEMS Microbiol Ecol 75(1):2–16
8 Bioinformatics: A New Insight Tool to Deal with Environment Management
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bacteria within Cambodian sediments following amendment with acetate. Appl Environ
Microbiol 73:1041–1048
Lee SY, Kim GH, Yun SH, Choi CW, Yi YS, Kim J, Chung YH, Park EC, Kim S II (2016)
Proteogenomic characterization of monocyclic aromatic hydrocarbon degradation pathways in
the aniline degrading bacterium Burkholderia sp K24. PLoS One 11(4):e0154233
Liu D, An Z, Mao Z, Ma L, Lu Z (2015) Enhanced heavy metal tolerance and accumulation by
transgenic sugar beets expressing Streptococcus thermophilus StGCS-GS in the presence of Cd,
Zn and Cu alone or in combination. PLoS One 10:e0128824. https://doi.org/10.1371/journal.
pone.0128824
Lovley DR, Coates JD (1997) Bioremediation of metal contamination. Curr Opin Biotechnol
8:285–289
Lovley DR (2003) Cleaning up with genomics: applying molecular biology to bioremediation. Nat
Rev Microbiol 1:35–44
Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, Rattei T, Damste JS, Spieck E,
Le Paslier D, Daims H (2010) A Nitrospira metagenome illuminates the physiology and
evolution of globally important nitrite-oxidizing bacteria. Proc Natl Acad Sci U S A
107:13479–13484
Ma L, Zhuo R, Liu H, Yu D, Jiang M, Zhang X, Yang Y (2014) Efficient decolorization and
detoxification of the sulfonated azo dye Reactive Orange 16 and simulated textile wastewater
containing Reactive Orange 16 by the white-rot fungus Ganoderma sp. En3 isolated from the
forest of Tzu-chin Mountain in China. Biochem Eng J 82:1–9
Malik A (2004) Metal bioremediation through growing cells. Environ Int 30:261–278
Marco-Urrea E, García-Romera I, Aranda E (2015) Potential of non-ligninolytic fungi in bioremediation of chlorinated and polycyclic aromatic hydrocarbons. N Biotechnol 32(6):620–628
Margot J, Bennati-Granier C, Maillard J, Blánquez P, Barry DA, Holliger C (2013) Bacterial versus
fungal laccase: potential for micropollutant degradation. AMB Express 3:1–30. https://doi.org/
10.1186/2191-0855-3-63
Markou G, Georgakakis D (2011) Cultivation of filamentous cyanobacteria (blue-green algae) in
agro-industrial wastes and wastewaters: a review. Appl Energy 88:3389–3401
Martín HG, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC et al (2006) Metagenomic
analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat
Biotechnol 24:1263–1269
Martins MR, Pereira P, Lima N, Cruz-Morais J (2013) Degradation of Metalaxyl and Folpet by
filamentous fungi isolated from Portuguese (Alentejo) vineyard soils. Arch Environ Contam
Toxicol 65:67–77
Martins TM, Núñez O, Gallart-Ayala H, Leitão MC, Galceran MT, Silva Pereira C (2014) New
branches in the degradation pathway of monochlorocatechols by Aspergillus nidulans: a
metabolomics analysis. J Hazarad Mater 268:264–272
Melton ED, Swanner ED, Behrens S, Schmidt C, Kappler A (2014) The interplay of microbially
mediated and abiotic reactions in the biogeochemical Fe cycle. Nat Rev Microbiol 12:797–808.
https://doi.org/10.1038/nrmicro3347
Meza B, de- Bashan LE, Hernandez JP, Bashan Y (2015b) Accumulation of intra-cellular
polyphosphate in Chlorella vulgaris cells is related to indole-3-acetic acid produced by
Azospirillum brasilense. Res Microbiol 166:399–407
Meza B, de- Bashan LE, Bashan Y (2015a) Involvement of indole-3-acetic acid produced by
Azospirillum brasilense in accumulating intracellular ammonium in Chlorella vulgaris. Res
Microbiol 166:72–83
Mohanty S, Jasmine J, Mukherji S (2013) Practical considerations and challenges involved in
surfactant enhanced bioremediation of oil. Biomed Res Int 2013:328608
Morales SE, Holben WE (2011) Linking bacterial identities and ecosystem processes: can ‘omic’
analyses be more than the sum of their parts? FEMS Microbiol Ecol 75(1):2–16
8 Bioinformatics: A New Insight Tool to Deal with Environment Management
181