inoculation with the arbuscular mycorrhizal fungus Funneliformis mosseae. Plant Cell Physiol
58:1689–1699
Rich MK, Schorderet M, Bapaume L, Falquet L, Morel
P, Vandenbussche M, Reinhardt D (2015) The
Petunia GRAS transcription factor ATA/RAM1
regulates symbiotic gene expression and fungal
morphogenesis in arbuscular mycorrhiza. Plant
Physiol 168:788–797
Rimington WR, Pressel S, Duckett JG, Bidartondo MI
(2015) Fungal associations of basal vascular
plants: reopening a closed book? New Phytol
205:1394–1398
Rivero J, A ´ lvarez D, Flors V, Azco ´n-Aguilar C, Pozo
MJ (2018) Root metabolic plasticity underlies
functional diversity in mycorrhiza-enhanced
stress tolerance in tomato. New Phytol 220
(4):1322–1336
Ropars J, Lo Y-C, Dumas E, Snirc A, Begerow D, Rollnik
T, Lacoste S, Dupont J, Giraud T, Lo ´pez-Villavicencio M (2016) Fertility depression among
cheese-making Penicillium roqueforti strains suggests degeneration during domestication. Evolution 70(9):2099–2109
Russo G, Spinella S, Sciacca E, Bonfante P, Genre A
(2013) Automate analysis of calcium spiking profiles with CaSA software: two case studies from
root-microbe symbioses. BMC Plant Biol 13:224
Sagan M, Morandi D, Tarenghi E, Duc G (1995) Selection of nodulation and mycorrhizal mutants in the
model plant Medicago truncatula (Gaertn.) after cray mutagenesis. Plant Sci 111:63–71
Saito K, Yoshikawa M, Yano K, Miwa H, Uchida H,
Asamizu E, Sato S, Tabata S, Imaizumi-Anraku
H, Umehara Y, Kouchi H, Murooka Y, Szczyglowski K, Downie JA, Parniske M, Hayashi M,
Kawaguchi M (2007) NUCLEOPORIN85 is
required for calcium spiking, fungal and bacterial
symbioses, and seed production in Lotus japonicus. Plant Cell 19:610–624
Salvioli A, Ghignone S, Novero M, Navazio L, Venice F,
Bagnaresi P, Bonfante P (2016) Symbiosis with an
endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential. ISME
J 10:130–144
Sawers RJH, Gebreselassie MN, Janos DP, Paszkowski
U (2010) Characterizing variation in mycorrhiza
effect among diverse plant varieties. Theor Appl
Genet 120:1029–1039
Sawers RJH, Svane SF, Quan C, Grønlund M, Wozniak
B, Gebreselassie MN, Gonza ´lez Mun ˜oz E, Cha ´vez
Montes RA, Baxter I, Goudet J, Jakobsen I, Paszkowski U (2017) Phosphorus acquisition efficiency
in arbuscular mycorrhizal maize is correlated with
the abundance of root external hyphae and the
accumulation of transcripts encoding PHT1 phosphate transporters. New Phytol 214:632–643
Schirawski J, Mannhaupt G, Munch K, Brefort T, Schipper K, Doehlemann G, Di Stasio M, Rossel N,
Mendoza-Mendoza A, Pester D, Muller O, Winterberg B, Meyer E, Ghareeb H, Wollenberg T, Munsterkotter M, Wong P, Walter M, Stukenbrock E,
Guldener U, Kahmann R (2010) Pathogenicity
determinants in smut fungi revealed by genome
comparison. Science 330:1546–1548
Schornack S, Huitema E, Cano LM, Bozkurt TO, Oliva
R, Van Damme M et al (2009) Ten things to know
about oomycete effectors. Mol Plant Pathol
10:795–803
Schweiger R, Baier MC, Persicke M, Muller C (2014)
High specificity in plant metabolic responses to
arbuscular mycorrhiza. Nat Commun 5:3886
Se ˛dzielewska Toro K, Brachmann A (2016) The effector
candidate repertoire of the arbuscular mycorrhizal
fungus Rhizophagus clarus. BMC Genomics
17:101. https://doi.org/10.1186/s12864-016-2422-y
Shimizu T, Nakano T, Takamizawa D, Desaki Y, IshiiMinami N, Nishizawa Y, Minami E, Okada K,
Yamane H, Kaku H, Shibuya N (2010) Two LysM
receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice.
Plant J 64:204–214
Shimoda Y, Han L, Yamazaki T, Suzuki R, Hayashi M,
Imaizumi-Anraku H (2012) Rhizobial and fungal
symbioses show different requirements for calmodulin binding to calcium calmodulindependent protein kinase in Lotus japonicus.
Plant Cell 24(1):304–321
Siciliano V, Genre A, Balestrini R, Cappellazzo G, Dewit
PJGM, Bonfante P (2007) Transcriptome analysis
of arbuscular mycorrhizal roots during development of the prepenetration apparatus. Plant
Physiol 144:1455–1466
Silvestri A, Fiorilli V, Miozzi L, Accotto GP, Turina M,
Lanfranco L (2019) In silico analysis of fungal
small RNA accumulation reveals putative plant
mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant. BMC
Genomics 20:169
Singh AK, Hamel C, DePauw RM, Knox RE (2012)
Genetic variability in arbuscular mycorrhizal
fungi compatibility supports the selection of
durum wheat genotypes for enhancing soil ecological services and cropping systems. Can J Microbiol 58(2012):293–302
Smit P, Raedts J, Portyanko V, Debelle ´ F, Gough C,
Bisseling T, Geurts R (2005) NSP1 of the GRAS
protein family is essential for rhizobial nod factorinduced transcription. Science 308(5729):1789–
1791
Smith SE, Smith FA, Jakobsen I (2004) Functional
diversity in arbuscular mycorrhizal (AM) symbioses: the contribution of the mycorrhizal P
uptake pathway is not correlated with mycorrhizal
responses in growth or total P uptake. New Phytol
162:511–524
Soto MJ, Domı ´nguez-Ferreras A, Pe ´rez-Mendoza D,
Sanjua ´n J, Olivares J (2009) Mutualism versus
7 Genetics and Genomics Decipher Partner Biology in Arbuscular Mycorrhizas
169
58:1689–1699
Rich MK, Schorderet M, Bapaume L, Falquet L, Morel
P, Vandenbussche M, Reinhardt D (2015) The
Petunia GRAS transcription factor ATA/RAM1
regulates symbiotic gene expression and fungal
morphogenesis in arbuscular mycorrhiza. Plant
Physiol 168:788–797
Rimington WR, Pressel S, Duckett JG, Bidartondo MI
(2015) Fungal associations of basal vascular
plants: reopening a closed book? New Phytol
205:1394–1398
Rivero J, A ´ lvarez D, Flors V, Azco ´n-Aguilar C, Pozo
MJ (2018) Root metabolic plasticity underlies
functional diversity in mycorrhiza-enhanced
stress tolerance in tomato. New Phytol 220
(4):1322–1336
Ropars J, Lo Y-C, Dumas E, Snirc A, Begerow D, Rollnik
T, Lacoste S, Dupont J, Giraud T, Lo ´pez-Villavicencio M (2016) Fertility depression among
cheese-making Penicillium roqueforti strains suggests degeneration during domestication. Evolution 70(9):2099–2109
Russo G, Spinella S, Sciacca E, Bonfante P, Genre A
(2013) Automate analysis of calcium spiking profiles with CaSA software: two case studies from
root-microbe symbioses. BMC Plant Biol 13:224
Sagan M, Morandi D, Tarenghi E, Duc G (1995) Selection of nodulation and mycorrhizal mutants in the
model plant Medicago truncatula (Gaertn.) after cray mutagenesis. Plant Sci 111:63–71
Saito K, Yoshikawa M, Yano K, Miwa H, Uchida H,
Asamizu E, Sato S, Tabata S, Imaizumi-Anraku
H, Umehara Y, Kouchi H, Murooka Y, Szczyglowski K, Downie JA, Parniske M, Hayashi M,
Kawaguchi M (2007) NUCLEOPORIN85 is
required for calcium spiking, fungal and bacterial
symbioses, and seed production in Lotus japonicus. Plant Cell 19:610–624
Salvioli A, Ghignone S, Novero M, Navazio L, Venice F,
Bagnaresi P, Bonfante P (2016) Symbiosis with an
endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential. ISME
J 10:130–144
Sawers RJH, Gebreselassie MN, Janos DP, Paszkowski
U (2010) Characterizing variation in mycorrhiza
effect among diverse plant varieties. Theor Appl
Genet 120:1029–1039
Sawers RJH, Svane SF, Quan C, Grønlund M, Wozniak
B, Gebreselassie MN, Gonza ´lez Mun ˜oz E, Cha ´vez
Montes RA, Baxter I, Goudet J, Jakobsen I, Paszkowski U (2017) Phosphorus acquisition efficiency
in arbuscular mycorrhizal maize is correlated with
the abundance of root external hyphae and the
accumulation of transcripts encoding PHT1 phosphate transporters. New Phytol 214:632–643
Schirawski J, Mannhaupt G, Munch K, Brefort T, Schipper K, Doehlemann G, Di Stasio M, Rossel N,
Mendoza-Mendoza A, Pester D, Muller O, Winterberg B, Meyer E, Ghareeb H, Wollenberg T, Munsterkotter M, Wong P, Walter M, Stukenbrock E,
Guldener U, Kahmann R (2010) Pathogenicity
determinants in smut fungi revealed by genome
comparison. Science 330:1546–1548
Schornack S, Huitema E, Cano LM, Bozkurt TO, Oliva
R, Van Damme M et al (2009) Ten things to know
about oomycete effectors. Mol Plant Pathol
10:795–803
Schweiger R, Baier MC, Persicke M, Muller C (2014)
High specificity in plant metabolic responses to
arbuscular mycorrhiza. Nat Commun 5:3886
Se ˛dzielewska Toro K, Brachmann A (2016) The effector
candidate repertoire of the arbuscular mycorrhizal
fungus Rhizophagus clarus. BMC Genomics
17:101. https://doi.org/10.1186/s12864-016-2422-y
Shimizu T, Nakano T, Takamizawa D, Desaki Y, IshiiMinami N, Nishizawa Y, Minami E, Okada K,
Yamane H, Kaku H, Shibuya N (2010) Two LysM
receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice.
Plant J 64:204–214
Shimoda Y, Han L, Yamazaki T, Suzuki R, Hayashi M,
Imaizumi-Anraku H (2012) Rhizobial and fungal
symbioses show different requirements for calmodulin binding to calcium calmodulindependent protein kinase in Lotus japonicus.
Plant Cell 24(1):304–321
Siciliano V, Genre A, Balestrini R, Cappellazzo G, Dewit
PJGM, Bonfante P (2007) Transcriptome analysis
of arbuscular mycorrhizal roots during development of the prepenetration apparatus. Plant
Physiol 144:1455–1466
Silvestri A, Fiorilli V, Miozzi L, Accotto GP, Turina M,
Lanfranco L (2019) In silico analysis of fungal
small RNA accumulation reveals putative plant
mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant. BMC
Genomics 20:169
Singh AK, Hamel C, DePauw RM, Knox RE (2012)
Genetic variability in arbuscular mycorrhizal
fungi compatibility supports the selection of
durum wheat genotypes for enhancing soil ecological services and cropping systems. Can J Microbiol 58(2012):293–302
Smit P, Raedts J, Portyanko V, Debelle ´ F, Gough C,
Bisseling T, Geurts R (2005) NSP1 of the GRAS
protein family is essential for rhizobial nod factorinduced transcription. Science 308(5729):1789–
1791
Smith SE, Smith FA, Jakobsen I (2004) Functional
diversity in arbuscular mycorrhizal (AM) symbioses: the contribution of the mycorrhizal P
uptake pathway is not correlated with mycorrhizal
responses in growth or total P uptake. New Phytol
162:511–524
Soto MJ, Domı ´nguez-Ferreras A, Pe ´rez-Mendoza D,
Sanjua ´n J, Olivares J (2009) Mutualism versus
7 Genetics and Genomics Decipher Partner Biology in Arbuscular Mycorrhizas
169