Adnan M, Zheng W, Islam W et al (2017) Carbon catabolite repression in filamentous Fungi. Int J Mol Sci
19:48. https://doi.org/10.3390/ijms19010048
Aronson BD, Johnson KA, Dunlap JC (1994) Circadian
clock locus frequency: protein encoded by a single
open reading frame defines period length and temperature compensation. Proc Natl Acad Sci U S A
91:7683–7687
Austin B (1968) An endogenous rhythm of spore discharge in Sordaria fimicola. Ann Bot 32:262–278
Baek M, Virgilio S, Lamb TM et al (2019) Circadian
clock regulation of the glycogen synthase (gsn)
gene by WCC is critical for rhythmic glycogen
metabolism in Neurospora crassa. Proc Natl Acad
Sci 116:10435–10440. https://doi.org/10.1073/
pnas.1815360116
Bailey C, Arst HNJ (1975) Carbon catabolite repression
in Aspergillus nidulans. Eur J Biochem 51:573–577.
https://doi.org/10.1111/j.1432-1033.1975.tb03958.
x
Baker CL, Kettenbach AN, Loros JJ et al (2009) Quantitative proteomics reveals a dynamic Interactome
and phase-specific phosphorylation in the Neurospora circadian clock. Mol Cell 34:354–363. https://
doi.org/10.1016/j.molcel.2009.04.023
Ballario P, Macino G (1997) White collar proteins:
PASsing the light signal in Neurospora crassa.
Trends Microbiol 5:458–462. https://doi.org/
10.1016/S0966-842X(97)01144-X
Ballario P, Vittorioso P, Magrelli A et al (1996) White
collar-1, a central regulator of blue light responses
in Neurospora, is a zinc finger protein. EMBO J
15:1650–1657.
https://doi.org/10.1002/j.14602075.1996.tb00510.x
Ballario P, Talora C, Galli D et al (1998) Roles in dimerization and blue light photoresponse of the PAS
and LOV domains of Neurospora crassa white collar proteins. Mol Microbiol 29:719–729. https://
doi.org/10.1046/j.1365-2958.1998.00955.x
Beadle GW, Tatum EL (1941) Genetic control of biochemical reactions in Neurospora. Proc Natl Acad
Sci 27:499
Beckwith EJ, Yanovsky MJ (2014) Circadian regulation
of gene expression: at the crossroads of transcriptional and post-transcriptional regulatory networks. Curr Opin Genet Dev 27:35–42. https://
doi.org/10.1016/j.gde.2014.03.007
Belden WJ, Larrondo LF, Froehlich AC et al (2007a) The
band mutation in Neurospora crassa is a dominant
allele of ras-1 implicating RAS signaling in circadian output. Genes Dev 21:1494–1505. https://doi.
org/10.1101/gad.1551707
Belden WJ, Loros JJ, Dunlap JC (2007b) Execution of
the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatinremodeling enzyme CLOCKSWITCH. Mol Cell
25:587–600.
https://doi.org/10.1016/j.molcel.2007.01.010
Belden WJ, Lewis ZA, Selker EU et al (2011) CHD1
remodels chromatin and influences transient
DNA methylation at the clock gene frequency.
PLoS Genet 7:e1002166. https://doi.org/10.1371/
journal.pgen.1002166
Bell-Pedersen D, Cassone VM, Earnest DJ et al (2005)
Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat Rev Genet
6:544–556. https://doi.org/10.1038/nrg1633
Bennett LD, Beremand P, Thomas TL, Bell-Pedersen D
(2013) Circadian activation of the mitogenactivated protein kinase MAK-1 facilitates
rhythms in clock-controlled genes in Neurospora
crassa. Eukaryot Cell 12:59–69. https://doi.org/
10.1128/EC.00207-12
Bluhm BH, Burnham AM, Dunkle LD (2010) A circadian rhythm regulating hyphal melanization in
Cercospora kikuchii. Mycologia 102:1221–1228.
https://doi.org/10.3852/09-041
Brandt WH (1953) Zonation in a prolineless strain of
Neurospora. Mycologia 45:194–208
Buhr ED, Yoo S-H, Takahashi JS (2010) Temperature as
a universal resetting cue for mammalian circadian
oscillators. Science 330:379–385. https://doi.org/
10.1126/science.1195262
Canessa P, Schumacher J, Hevia MA et al (2013) Assessing the effects of light on differentiation and virulence of the plant pathogen Botrytis cinerea:
characterization of the white collar complex.
PLoS One 8:e84223. https://doi.org/10.1371/journal.pone.0084223
Carlson JM, Chakravarty A, DeZiel CE, Gross RH (2007)
SCOPE: a web server for practical de novo motif
discovery. Nucleic Acids Res 35:W259–W264
Case ME, Griffith J, Dong W et al (2014) The aging
biological clock in Neurospora crassa. Ecol Evol
4:3494–3507. https://doi.org/10.1002/ece3.1202
Caster SZ, Castillo K, Sachs MS, Bell-Pedersen D (2016)
Circadian clock regulation of mRNA translation
through eukaryotic elongation factor eEF-2. Proc
Natl Acad Sci 113:9605–9610. https://doi.org/
10.1073/pnas.1525268113
Cha J, Chang SS, Huang G et al (2008) Control of
WHITE COLLAR localization by phosphorylation
is a critical step in the circadian negative feedback
process. EMBO J 27:3246–3255. https://doi.org/
10.1038/emboj.2008.245
Cha J, Yuan H, Liu Y (2011) Regulation of the activity
and cellular localization of the circadian clock
protein FRQ. J Biol Chem 286:11469–11478.
https://doi.org/10.1074/jbc.M111.219782
Cha J, Zhou M, Liu Y (2013) CATP is a critical component of the Neurospora circadian clock by regulating the nucleosome occupancy rhythm at the
frequency locus. EMBO Rep 14:923–930. https://
doi.org/10.1038/embor.2013.131
Chen CH, Ringelberg CS, Gross RH et al (2009)
Genome-wide
analysis
of
light-inducible
responses reveals hierarchical light signalling in
96
M. S. Jankowski et al.
19:48. https://doi.org/10.3390/ijms19010048
Aronson BD, Johnson KA, Dunlap JC (1994) Circadian
clock locus frequency: protein encoded by a single
open reading frame defines period length and temperature compensation. Proc Natl Acad Sci U S A
91:7683–7687
Austin B (1968) An endogenous rhythm of spore discharge in Sordaria fimicola. Ann Bot 32:262–278
Baek M, Virgilio S, Lamb TM et al (2019) Circadian
clock regulation of the glycogen synthase (gsn)
gene by WCC is critical for rhythmic glycogen
metabolism in Neurospora crassa. Proc Natl Acad
Sci 116:10435–10440. https://doi.org/10.1073/
pnas.1815360116
Bailey C, Arst HNJ (1975) Carbon catabolite repression
in Aspergillus nidulans. Eur J Biochem 51:573–577.
https://doi.org/10.1111/j.1432-1033.1975.tb03958.
x
Baker CL, Kettenbach AN, Loros JJ et al (2009) Quantitative proteomics reveals a dynamic Interactome
and phase-specific phosphorylation in the Neurospora circadian clock. Mol Cell 34:354–363. https://
doi.org/10.1016/j.molcel.2009.04.023
Ballario P, Macino G (1997) White collar proteins:
PASsing the light signal in Neurospora crassa.
Trends Microbiol 5:458–462. https://doi.org/
10.1016/S0966-842X(97)01144-X
Ballario P, Vittorioso P, Magrelli A et al (1996) White
collar-1, a central regulator of blue light responses
in Neurospora, is a zinc finger protein. EMBO J
15:1650–1657.
https://doi.org/10.1002/j.14602075.1996.tb00510.x
Ballario P, Talora C, Galli D et al (1998) Roles in dimerization and blue light photoresponse of the PAS
and LOV domains of Neurospora crassa white collar proteins. Mol Microbiol 29:719–729. https://
doi.org/10.1046/j.1365-2958.1998.00955.x
Beadle GW, Tatum EL (1941) Genetic control of biochemical reactions in Neurospora. Proc Natl Acad
Sci 27:499
Beckwith EJ, Yanovsky MJ (2014) Circadian regulation
of gene expression: at the crossroads of transcriptional and post-transcriptional regulatory networks. Curr Opin Genet Dev 27:35–42. https://
doi.org/10.1016/j.gde.2014.03.007
Belden WJ, Larrondo LF, Froehlich AC et al (2007a) The
band mutation in Neurospora crassa is a dominant
allele of ras-1 implicating RAS signaling in circadian output. Genes Dev 21:1494–1505. https://doi.
org/10.1101/gad.1551707
Belden WJ, Loros JJ, Dunlap JC (2007b) Execution of
the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatinremodeling enzyme CLOCKSWITCH. Mol Cell
25:587–600.
https://doi.org/10.1016/j.molcel.2007.01.010
Belden WJ, Lewis ZA, Selker EU et al (2011) CHD1
remodels chromatin and influences transient
DNA methylation at the clock gene frequency.
PLoS Genet 7:e1002166. https://doi.org/10.1371/
journal.pgen.1002166
Bell-Pedersen D, Cassone VM, Earnest DJ et al (2005)
Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat Rev Genet
6:544–556. https://doi.org/10.1038/nrg1633
Bennett LD, Beremand P, Thomas TL, Bell-Pedersen D
(2013) Circadian activation of the mitogenactivated protein kinase MAK-1 facilitates
rhythms in clock-controlled genes in Neurospora
crassa. Eukaryot Cell 12:59–69. https://doi.org/
10.1128/EC.00207-12
Bluhm BH, Burnham AM, Dunkle LD (2010) A circadian rhythm regulating hyphal melanization in
Cercospora kikuchii. Mycologia 102:1221–1228.
https://doi.org/10.3852/09-041
Brandt WH (1953) Zonation in a prolineless strain of
Neurospora. Mycologia 45:194–208
Buhr ED, Yoo S-H, Takahashi JS (2010) Temperature as
a universal resetting cue for mammalian circadian
oscillators. Science 330:379–385. https://doi.org/
10.1126/science.1195262
Canessa P, Schumacher J, Hevia MA et al (2013) Assessing the effects of light on differentiation and virulence of the plant pathogen Botrytis cinerea:
characterization of the white collar complex.
PLoS One 8:e84223. https://doi.org/10.1371/journal.pone.0084223
Carlson JM, Chakravarty A, DeZiel CE, Gross RH (2007)
SCOPE: a web server for practical de novo motif
discovery. Nucleic Acids Res 35:W259–W264
Case ME, Griffith J, Dong W et al (2014) The aging
biological clock in Neurospora crassa. Ecol Evol
4:3494–3507. https://doi.org/10.1002/ece3.1202
Caster SZ, Castillo K, Sachs MS, Bell-Pedersen D (2016)
Circadian clock regulation of mRNA translation
through eukaryotic elongation factor eEF-2. Proc
Natl Acad Sci 113:9605–9610. https://doi.org/
10.1073/pnas.1525268113
Cha J, Chang SS, Huang G et al (2008) Control of
WHITE COLLAR localization by phosphorylation
is a critical step in the circadian negative feedback
process. EMBO J 27:3246–3255. https://doi.org/
10.1038/emboj.2008.245
Cha J, Yuan H, Liu Y (2011) Regulation of the activity
and cellular localization of the circadian clock
protein FRQ. J Biol Chem 286:11469–11478.
https://doi.org/10.1074/jbc.M111.219782
Cha J, Zhou M, Liu Y (2013) CATP is a critical component of the Neurospora circadian clock by regulating the nucleosome occupancy rhythm at the
frequency locus. EMBO Rep 14:923–930. https://
doi.org/10.1038/embor.2013.131
Chen CH, Ringelberg CS, Gross RH et al (2009)
Genome-wide
analysis
of
light-inducible
responses reveals hierarchical light signalling in
96
M. S. Jankowski et al.