1 3
Top Curr Chem (Z) (2018) 376:10
48. Blankenship RE (2002) Molecular mechanisms of photosynthesis. Wiley-Blackwell. https ://doi.
org/10.1002/97804 70758 472
49. Lukas AS, Zhao Y, Miller SE, Wasielewski MR (2002) Biomimetic electron transfer using low
energy excited states: a green perylene-based analogue of chlorophyll a. J Phys Chem B 106:1299–
1306. https ://doi.org/10.1021/jp014 073w
50. Rockwell NC, Lagarias JC (2010) A brief history of phytochromes. ChemPhysChem 11:1172–
1180. https ://doi.org/10.1002/cphc.20090 0894
51. Lamparter T (2004) Evolution of cyanobacterial and plant phytochromes. FEBS Lett 573:1–5.
https ://doi.org/10.1016/j.febsl et.2004.07.050
52. Kim PW, Rockwell NC, Freer LH et al (2013) Unraveling the primary isomerization dynamics in
cyanobacterial phytochrome Cph1 with multipulse manipulations. J Phys Chem Lett 4:2605–2609.
https ://doi.org/10.1021/jz401 443q
53. Kim PW, Rockwell NC, Martin SS et al (2014) Dynamic inhomogeneity in the photodynamics of
cyanobacterial phytochrome Cph1. Biochemistry (Mosc) 53:2818–2826. https ://doi.org/10.1021/
bi500 108s
54. Dasgupta J, Frontiera RR, Taylor KC et al (2009) Ultrafast excited-state isomerization in
phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proc Natl Acad Sci
106:1784–1789
55. Spillane KM, Dasgupta J, Lagarias JC, Mathies RA (2009) Homogeneity of phytochrome Cph1
vibronic absorption revealed by resonance Raman intensity analysis. J Am Chem Soc 131:13946–
13948. https ://doi.org/10.1021/ja905 822m
56. Brixner T, Mančal T, Stiopkin IV, Fleming GR (2004) Phase-stabilized two-dimensional electronic
spectroscopy. J Chem Phys 121:4221. https ://doi.org/10.1063/1.17761 12
57. Turner DB, Wilk KE, Curmi PMG, Scholes GD (2011) Comparison of electronic and vibrational
coherence measured by two-dimensional electronic spectroscopy. J Phys Chem Lett 2:1904–1911.
https ://doi.org/10.1021/jz200 811p
58. Talapin DV, Lee J-S, Kovalenko MV, Shevchenko EV (2010) Prospects of colloidal nanocrystals
for electronic and optoelectronic applications. Chem Rev 110:389–458. https ://doi.org/10.1021/
cr900 137k
59. Van Amerongen H, Valkunas L, Van Grondelle R (2001) Photosynthetic excitons, 2000
60. Dostál J, Pšenčík J, Zigmantas D (2016) In situ mapping of the energy flow through the entire photosynthetic apparatus. Nat Chem 8:705–710. https ://doi.org/10.1038/nchem .2525 http://www.natur
e.com/nchem /journ al/v8/n7/abs/nchem .2525.html#suppl ement ary-infor matio n
61. Dahlberg PD, Fidler AF, Caram JR et al (2013) Energy transfer observed in live cells using twodimensional electronic spectroscopy. J Phys Chem Lett 4:3636–3640. https ://doi.org/10.1021/jz401
944q
62. Thyrhaug E, Žídek K, Dostál J et al (2016) Exciton structure and energy transfer in the Fenna–Matthews–Olson complex. J Phys Chem Lett 7:1653–1660. https ://doi.org/10.1021/acs.jpcle tt.6b005 34
63. Maiuri M, Réhault J, Carey A-M et al (2015) Ultra-broadband 2D electronic spectroscopy of carotenoid-bacteriochlorophyll interactions in the LH1 complex of a purple bacterium. J Chem Phys
142:212433. https ://doi.org/10.1063/1.49190 56
64. Polívka T, Sundström V (2009) Dark excited states of carotenoids: consensus and controversy.
Chem Phys Lett 477:1–11. https ://doi.org/10.1016/j.cplet t.2009.06.011
65. Moody G, Cundiff ST (2017) Advances in multi-dimensional coherent spectroscopy of semiconductor nanostructures. Adv Phys X 2:641–674. https ://doi.org/10.1080/23746 149.2017.13464 82
66. Fassioli F, Dinshaw R, Arpin PC, Scholes GD (2014) Photosynthetic light harvesting: excitons and
coherence. J R Soc Interface. https ://doi.org/10.1098/rsif.2013.0901
67. Scholes GD, Fleming GR, Chen LX et al (2017) Using coherence to enhance function in chemical
and biophysical systems. Nature 543:647–656. https ://doi.org/10.1038/natur e2142 5
68. Panitchayangkoon G, Hayes D, Fransted KA et al (2010) Long-lived quantum coherence in photosynthetic complexes at physiological temperature. Proc Natl Acad Sci 107:12766–12770. https ://
doi.org/10.1073/pnas.10054 84107
69. Calhoun TR, Ginsberg NS, Schlau-Cohen GS et al (2009) Quantum coherence enabled determination of the energy landscape in light-harvesting complex II. J Phys Chem B 113:16291–16295.
https ://doi.org/10.1021/jp908 300c
70. Fuller FD, Pan J, Gelzinis A et al (2014) Vibronic coherence in oxygenic photosynthesis. Nat
Chem. https ://doi.org/10.1038/nchem .2005
59
Reprinted from the journal
Top Curr Chem (Z) (2018) 376:10
48. Blankenship RE (2002) Molecular mechanisms of photosynthesis. Wiley-Blackwell. https ://doi.
org/10.1002/97804 70758 472
49. Lukas AS, Zhao Y, Miller SE, Wasielewski MR (2002) Biomimetic electron transfer using low
energy excited states: a green perylene-based analogue of chlorophyll a. J Phys Chem B 106:1299–
1306. https ://doi.org/10.1021/jp014 073w
50. Rockwell NC, Lagarias JC (2010) A brief history of phytochromes. ChemPhysChem 11:1172–
1180. https ://doi.org/10.1002/cphc.20090 0894
51. Lamparter T (2004) Evolution of cyanobacterial and plant phytochromes. FEBS Lett 573:1–5.
https ://doi.org/10.1016/j.febsl et.2004.07.050
52. Kim PW, Rockwell NC, Freer LH et al (2013) Unraveling the primary isomerization dynamics in
cyanobacterial phytochrome Cph1 with multipulse manipulations. J Phys Chem Lett 4:2605–2609.
https ://doi.org/10.1021/jz401 443q
53. Kim PW, Rockwell NC, Martin SS et al (2014) Dynamic inhomogeneity in the photodynamics of
cyanobacterial phytochrome Cph1. Biochemistry (Mosc) 53:2818–2826. https ://doi.org/10.1021/
bi500 108s
54. Dasgupta J, Frontiera RR, Taylor KC et al (2009) Ultrafast excited-state isomerization in
phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proc Natl Acad Sci
106:1784–1789
55. Spillane KM, Dasgupta J, Lagarias JC, Mathies RA (2009) Homogeneity of phytochrome Cph1
vibronic absorption revealed by resonance Raman intensity analysis. J Am Chem Soc 131:13946–
13948. https ://doi.org/10.1021/ja905 822m
56. Brixner T, Mančal T, Stiopkin IV, Fleming GR (2004) Phase-stabilized two-dimensional electronic
spectroscopy. J Chem Phys 121:4221. https ://doi.org/10.1063/1.17761 12
57. Turner DB, Wilk KE, Curmi PMG, Scholes GD (2011) Comparison of electronic and vibrational
coherence measured by two-dimensional electronic spectroscopy. J Phys Chem Lett 2:1904–1911.
https ://doi.org/10.1021/jz200 811p
58. Talapin DV, Lee J-S, Kovalenko MV, Shevchenko EV (2010) Prospects of colloidal nanocrystals
for electronic and optoelectronic applications. Chem Rev 110:389–458. https ://doi.org/10.1021/
cr900 137k
59. Van Amerongen H, Valkunas L, Van Grondelle R (2001) Photosynthetic excitons, 2000
60. Dostál J, Pšenčík J, Zigmantas D (2016) In situ mapping of the energy flow through the entire photosynthetic apparatus. Nat Chem 8:705–710. https ://doi.org/10.1038/nchem .2525 http://www.natur
e.com/nchem /journ al/v8/n7/abs/nchem .2525.html#suppl ement ary-infor matio n
61. Dahlberg PD, Fidler AF, Caram JR et al (2013) Energy transfer observed in live cells using twodimensional electronic spectroscopy. J Phys Chem Lett 4:3636–3640. https ://doi.org/10.1021/jz401
944q
62. Thyrhaug E, Žídek K, Dostál J et al (2016) Exciton structure and energy transfer in the Fenna–Matthews–Olson complex. J Phys Chem Lett 7:1653–1660. https ://doi.org/10.1021/acs.jpcle tt.6b005 34
63. Maiuri M, Réhault J, Carey A-M et al (2015) Ultra-broadband 2D electronic spectroscopy of carotenoid-bacteriochlorophyll interactions in the LH1 complex of a purple bacterium. J Chem Phys
142:212433. https ://doi.org/10.1063/1.49190 56
64. Polívka T, Sundström V (2009) Dark excited states of carotenoids: consensus and controversy.
Chem Phys Lett 477:1–11. https ://doi.org/10.1016/j.cplet t.2009.06.011
65. Moody G, Cundiff ST (2017) Advances in multi-dimensional coherent spectroscopy of semiconductor nanostructures. Adv Phys X 2:641–674. https ://doi.org/10.1080/23746 149.2017.13464 82
66. Fassioli F, Dinshaw R, Arpin PC, Scholes GD (2014) Photosynthetic light harvesting: excitons and
coherence. J R Soc Interface. https ://doi.org/10.1098/rsif.2013.0901
67. Scholes GD, Fleming GR, Chen LX et al (2017) Using coherence to enhance function in chemical
and biophysical systems. Nature 543:647–656. https ://doi.org/10.1038/natur e2142 5
68. Panitchayangkoon G, Hayes D, Fransted KA et al (2010) Long-lived quantum coherence in photosynthetic complexes at physiological temperature. Proc Natl Acad Sci 107:12766–12770. https ://
doi.org/10.1073/pnas.10054 84107
69. Calhoun TR, Ginsberg NS, Schlau-Cohen GS et al (2009) Quantum coherence enabled determination of the energy landscape in light-harvesting complex II. J Phys Chem B 113:16291–16295.
https ://doi.org/10.1021/jp908 300c
70. Fuller FD, Pan J, Gelzinis A et al (2014) Vibronic coherence in oxygenic photosynthesis. Nat
Chem. https ://doi.org/10.1038/nchem .2005
59
Reprinted from the journal