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isomerization. J Phys Chem B 112:8395–8405. doi:10.1016/B978-044452821-6/50058-7
260. Chung HS, Ganim Z, Jones KC, Tokmakoff A (2007) Transient 2D IR spectroscopy of ubiquitin
unfolding dynamics. Proc Natl Acad Sci USA 104:14237–14242. doi:10.1073/pnas.0700959104
261. Jones KC, Peng CS, Tokmakoff A (2013) Folding of a heterogeneous b-hairpin peptide from
temperature-jump 2D IR spectroscopy. Proc Natl Acad Sci USA 110:2828–2833. doi:10.1073/pnas.
1211968110
262. Baiz CR, Lin YS, Peng CS et al (2014) A molecular interpretation of 2D IR protein folding
experiments with markov state models. Biophys J 106:1359–1370. doi:10.1016/j.bpj.2014.02.008
263. Chung HS, Khalil M, Smith AW, Tokmakoff A (2007) Transient two-dimensional IR spectrometer
for probing nanosecond temperature-jump kinetics. Rev Sci Instrum. doi:10.1063/1.2743168
264. Peng CS, Baiz CR, Tokmakoff A (2013) Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy. Proc Natl Acad Sci USA
110:9243–9248. doi:10.1073/pnas.1303235110
265. Bredenbeck J, Helbing J, Hamm P (2004) Transient two-dimensional infrared spectroscopy:
exploring the polarization dependence. J Chem Phys 121:5943–5957. doi:10.1063/1.1779575
266. Andresen ER, Hamm P (2009) Site-specific difference 2D-IR spectroscopy of bacteriorhodopsin.
J Phys Chem B 113:6520–6527. doi:10.1021/jp810397u
267. Bredenbeck J, Helbing J, Hamm P (2005) Solvation beyond the linear response regime. Phys Rev
Lett 95:1–4. doi:10.1103/PhysRevLett.95.083201
268. Baiz CR, Nee MJ, McCanne R, Kubarych KJ (2008) Ultrafast nonequilibrium Fourier-transform
two-dimensional infrared spectroscopy. Opt Lett 33:2533–2535. doi:10.1364/OL.33.002533
269. Bredenbeck J, Helbing J, Nienhaus K et al (2007) Protein ligand migration mapped by nonequilibrium 2D-IR exchange spectroscopy. Proc Natl Acad Sci USA 104:14243–14248. doi:10.1073/
pnas.0607758104
270. Van Wilderen LJGW, Messmer AT, Bredenbeck J (2014) Mixed IR/Vis two-dimensional spectroscopy: chemical exchange beyond the vibrational lifetime and sub-ensemble selective photochemistry. Angew Chemie-Int Ed 53:2667–2672. doi:10.1002/anie.201305950
271. Zhang XX, Jones KC, Fitzpatrick A et al (2016) Studying protein–protein binding through T-jump
induced dissociation: transient 2D IR spectroscopy of insulin dimer. J Phys Chem B
120:5134–5145. doi:10.1021/acs.jpcb.6b03246
272. Courtney TL, Fox ZW, Estergreen L, Khalil M (2015) Measuring coherently coupled
intramolecular vibrational and charge transfer dynamics with two-dimensional vibrational-electronic spectroscopy. J Phys Chem Lett 6:1286–1292. doi:10.1021/acs.jpclett.5b00356
273. Courtney TL, Fox ZW, Slenkamp KM, Khalil M (2015) Two-dimensional vibrational-electronic
spectroscopy. J Chem Phys 143:154201. doi:10.1063/1.4932983
274. Dahms F, Fingerhut BP, Nibbering ETJ et al (2017) Large-amplitude transfer motion of hydrated
excess protons mapped by ultrafast 2D IR spectroscopy. Science (80-) 5144:1–9. doi:10.1126/
science.aan5144
275. Balasubramanian M, Courtney TL, Gaynor JD, Khalil M (2016) Compression of tunable broadband
mid-IR pulses with a deformable mirror pulse shaper. J Opt Soc Am B 33:2033–2037. doi:10.1364/
JOSAB.33.002033
276. Gaynor JD, Courtney TL, Balasubramanian M, Khalil M (2016) Coherent Fourier transform twodimensional electronic-vibrational spectroscopy using an octave-spanning mid-IR probe. Opt Lett
41:2895–2898. doi:10.1364/UP.2016.UTu4A.7
277. Maiti KS (2015) Broadband two dimensional infrared spectroscopy of cyclic amide 2-Pyrrolidinone. Phys Chem Chem Phys 17:24998–25003. doi:10.1039/C5CP04272K
278. Wand A, Gdor I, Zhu J, et al (2013) Shedding new light on retinal protein photochemistry. Annu
Rev Phys Chem 64:null. doi:10.1146/annurev-physchem-040412-110148
279. Brixner T, Manc ˇal T, Stiopkin IV, Fleming GR (2004) Phase-stabilized two-dimensional electronic
spectroscopy. J Chem Phys 121:4221. doi:10.1063/1.1776112
280. Oliver TAA, Lewis NHC, Graham R (2014) Correlating the motion of electrons and nuclei with
two-dimensional electronic–vibrational spectroscopy. Proc Nat Acad Sci USA. doi:10.5452/maax7dd
281. Lewis NHC, Fleming GR (2016) Two-dimensional electronic-vibrational spectroscopy of chlorophyll a and b. J Phys Chem Lett 831–837. doi:10.1021/acs.jpclett.6b00037
Top Curr Chem (Z) (2017) 375:86
123
200
Reprinted from the journal
isomerization. J Phys Chem B 112:8395–8405. doi:10.1016/B978-044452821-6/50058-7
260. Chung HS, Ganim Z, Jones KC, Tokmakoff A (2007) Transient 2D IR spectroscopy of ubiquitin
unfolding dynamics. Proc Natl Acad Sci USA 104:14237–14242. doi:10.1073/pnas.0700959104
261. Jones KC, Peng CS, Tokmakoff A (2013) Folding of a heterogeneous b-hairpin peptide from
temperature-jump 2D IR spectroscopy. Proc Natl Acad Sci USA 110:2828–2833. doi:10.1073/pnas.
1211968110
262. Baiz CR, Lin YS, Peng CS et al (2014) A molecular interpretation of 2D IR protein folding
experiments with markov state models. Biophys J 106:1359–1370. doi:10.1016/j.bpj.2014.02.008
263. Chung HS, Khalil M, Smith AW, Tokmakoff A (2007) Transient two-dimensional IR spectrometer
for probing nanosecond temperature-jump kinetics. Rev Sci Instrum. doi:10.1063/1.2743168
264. Peng CS, Baiz CR, Tokmakoff A (2013) Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy. Proc Natl Acad Sci USA
110:9243–9248. doi:10.1073/pnas.1303235110
265. Bredenbeck J, Helbing J, Hamm P (2004) Transient two-dimensional infrared spectroscopy:
exploring the polarization dependence. J Chem Phys 121:5943–5957. doi:10.1063/1.1779575
266. Andresen ER, Hamm P (2009) Site-specific difference 2D-IR spectroscopy of bacteriorhodopsin.
J Phys Chem B 113:6520–6527. doi:10.1021/jp810397u
267. Bredenbeck J, Helbing J, Hamm P (2005) Solvation beyond the linear response regime. Phys Rev
Lett 95:1–4. doi:10.1103/PhysRevLett.95.083201
268. Baiz CR, Nee MJ, McCanne R, Kubarych KJ (2008) Ultrafast nonequilibrium Fourier-transform
two-dimensional infrared spectroscopy. Opt Lett 33:2533–2535. doi:10.1364/OL.33.002533
269. Bredenbeck J, Helbing J, Nienhaus K et al (2007) Protein ligand migration mapped by nonequilibrium 2D-IR exchange spectroscopy. Proc Natl Acad Sci USA 104:14243–14248. doi:10.1073/
pnas.0607758104
270. Van Wilderen LJGW, Messmer AT, Bredenbeck J (2014) Mixed IR/Vis two-dimensional spectroscopy: chemical exchange beyond the vibrational lifetime and sub-ensemble selective photochemistry. Angew Chemie-Int Ed 53:2667–2672. doi:10.1002/anie.201305950
271. Zhang XX, Jones KC, Fitzpatrick A et al (2016) Studying protein–protein binding through T-jump
induced dissociation: transient 2D IR spectroscopy of insulin dimer. J Phys Chem B
120:5134–5145. doi:10.1021/acs.jpcb.6b03246
272. Courtney TL, Fox ZW, Estergreen L, Khalil M (2015) Measuring coherently coupled
intramolecular vibrational and charge transfer dynamics with two-dimensional vibrational-electronic spectroscopy. J Phys Chem Lett 6:1286–1292. doi:10.1021/acs.jpclett.5b00356
273. Courtney TL, Fox ZW, Slenkamp KM, Khalil M (2015) Two-dimensional vibrational-electronic
spectroscopy. J Chem Phys 143:154201. doi:10.1063/1.4932983
274. Dahms F, Fingerhut BP, Nibbering ETJ et al (2017) Large-amplitude transfer motion of hydrated
excess protons mapped by ultrafast 2D IR spectroscopy. Science (80-) 5144:1–9. doi:10.1126/
science.aan5144
275. Balasubramanian M, Courtney TL, Gaynor JD, Khalil M (2016) Compression of tunable broadband
mid-IR pulses with a deformable mirror pulse shaper. J Opt Soc Am B 33:2033–2037. doi:10.1364/
JOSAB.33.002033
276. Gaynor JD, Courtney TL, Balasubramanian M, Khalil M (2016) Coherent Fourier transform twodimensional electronic-vibrational spectroscopy using an octave-spanning mid-IR probe. Opt Lett
41:2895–2898. doi:10.1364/UP.2016.UTu4A.7
277. Maiti KS (2015) Broadband two dimensional infrared spectroscopy of cyclic amide 2-Pyrrolidinone. Phys Chem Chem Phys 17:24998–25003. doi:10.1039/C5CP04272K
278. Wand A, Gdor I, Zhu J, et al (2013) Shedding new light on retinal protein photochemistry. Annu
Rev Phys Chem 64:null. doi:10.1146/annurev-physchem-040412-110148
279. Brixner T, Manc ˇal T, Stiopkin IV, Fleming GR (2004) Phase-stabilized two-dimensional electronic
spectroscopy. J Chem Phys 121:4221. doi:10.1063/1.1776112
280. Oliver TAA, Lewis NHC, Graham R (2014) Correlating the motion of electrons and nuclei with
two-dimensional electronic–vibrational spectroscopy. Proc Nat Acad Sci USA. doi:10.5452/maax7dd
281. Lewis NHC, Fleming GR (2016) Two-dimensional electronic-vibrational spectroscopy of chlorophyll a and b. J Phys Chem Lett 831–837. doi:10.1021/acs.jpclett.6b00037
Top Curr Chem (Z) (2017) 375:86
123
200
Reprinted from the journal