19. Saunders E, Tindall BJ, Fahnrich R, Lapidus A, Copeland A, del Rio TG et al (2010) Complete
genome sequence of Haloterrigena turkmenica type strain (4k
T ). Stand Genomic Sci
2(1):107–116
20. Fujisawa T, Narikawa R, Okamoto S, Ehira S, Yoshimura H, Suzuki I et al (2010) Genomic
structure of an economically important Cyanobacterium, Arthrospira (Spirulina) platensis
NIES-39. DNA Res 17:85–103
21. Grum-Gzhimaylo AA, Georgieva ML, Bondarenko SA, Debets JM, Bilanenko EN (2016) On
the diversity of fungi from soda soils. Fungal Divers 76(1):27–74
22. Keresztes ZG, Felfoldi T, Somogyi B, Szekely G, Dragos N, Marialigeti K et al (2012) First
record of picophytoplankton diversity in Central European hypersaline lakes. Extremophiles
16(5):759–769
23. Lanzen A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Ovreas L (2013) Surprising
prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian Soda
Lakes. PLoS One 8(8):e72577
24. Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jimenez CA, Min B, Choi IG
et al (2018) The obligate alkalophilc soda-lake fungus Sodiomyces alkalinus has shifted to a
protein diet. Mol Ecol 27:4808–4819
25. Pereira EO, Tsang A, McAllister TA, Menassa R (2013) The production and characterization of
a new active lipase from Acremonium alcalophilum using a plant bioreactor. Biotechnol
Biofuels 6:111
26. Reeve W, Chain P, O’Hara G, Ardley J, Nandesena K, Brau L et al (2010) Complete genome
sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419.
Stand Genomic Sci 2(1):77–86
27. Zhao B, Mesbah NM, Dalin E, Goodwin L, Nolan M, Pitluck S et al (2011) Complete genome
sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NMWN-LF. J Bacteriol 193(15):4023–4024
28. Sorokin DY, Berben T, Melton ED, Overmars L, Vavourakis CD, Muyzer G (2014) Microbial
diversity and biogeochemical cycling in soda lakes. Extremophiles 18(5):791–809
29. Cogne G, Gros JB, Dussap CG (2003) Identification of a metabolic network structure representative of Arthrospira (spirulina) platensis metabolism. Biotechnol Bioeng 84(6):667–676
30. Price GD, Badger MR, Woodger FJ, Long BM (2008) Advances in understanding the
cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters,
diversity, genetic regulation and prospects for engineering into plants. J Exp Bot 59(7):1441–
1461
31. Zhilina TN, Kevbrin VV, Tourova TP, Lysenko AM, Kostrikina NA, Zavarzin GA (2005)
Clostridium alkalicellum sp. nov., an obligately alkaliphilic cellulolytic bacterium from a soda
lake in the Baikal region. Microbiology 74(5):555–566
32. Garnova ES, Krasil’nikova EN (2003) Carbohydrate metabolism of the Saccharolytic
alkaliphilic anaerobes Halonatronum saccarophilum, Amphibacillus fermentum, and
Amphibacillus tropicus. Mikrobiologiia 72(5):627–632
33. Song Y, Xue Y, Ma Y (2013) Global microarray analysis of carbohydrate use in alkaliphilic
hemicellulolytic bacterium Bacillus sp. N16-5. PLoS One 8(1):e54090
34. Detkova EN, Pusheva MA (2006) Energy metabolism in halophilic and alkaliphilic acetogenic
bacteria. Microbiology 75(1):1–11
35. Frank YA, Kadnikov VV, Likina AP, Banks D, Beletsky AV, Sen’kina EI et al (2016)
Characterization and genome analysis of the first facultatively alkaliphilic Thermodesulfovibrio
isolated from the deep terrestrial subsurface. Front Microbiol 7:2000
36. Oremland RS, Hoeft SE, Santini JM, Bano N, Hollibaugh RA, Hollibaugh JT (2002) Anaerobic
oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing
chemoautotroph, strain MLHE-1. Appl Environ Microbiol 68:4795–4802
37. Hoeft SE, Blum JS, Stolz JF, Tabita FR, Witte B, King GM et al (2007) Alkalilimnicola
ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable
of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor. Int
J Syst Evol Microbiol 57(Pt 3):504–512
Genomics of Alkaliphiles
153
genome sequence of Haloterrigena turkmenica type strain (4k
T ). Stand Genomic Sci
2(1):107–116
20. Fujisawa T, Narikawa R, Okamoto S, Ehira S, Yoshimura H, Suzuki I et al (2010) Genomic
structure of an economically important Cyanobacterium, Arthrospira (Spirulina) platensis
NIES-39. DNA Res 17:85–103
21. Grum-Gzhimaylo AA, Georgieva ML, Bondarenko SA, Debets JM, Bilanenko EN (2016) On
the diversity of fungi from soda soils. Fungal Divers 76(1):27–74
22. Keresztes ZG, Felfoldi T, Somogyi B, Szekely G, Dragos N, Marialigeti K et al (2012) First
record of picophytoplankton diversity in Central European hypersaline lakes. Extremophiles
16(5):759–769
23. Lanzen A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Ovreas L (2013) Surprising
prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian Soda
Lakes. PLoS One 8(8):e72577
24. Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jimenez CA, Min B, Choi IG
et al (2018) The obligate alkalophilc soda-lake fungus Sodiomyces alkalinus has shifted to a
protein diet. Mol Ecol 27:4808–4819
25. Pereira EO, Tsang A, McAllister TA, Menassa R (2013) The production and characterization of
a new active lipase from Acremonium alcalophilum using a plant bioreactor. Biotechnol
Biofuels 6:111
26. Reeve W, Chain P, O’Hara G, Ardley J, Nandesena K, Brau L et al (2010) Complete genome
sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419.
Stand Genomic Sci 2(1):77–86
27. Zhao B, Mesbah NM, Dalin E, Goodwin L, Nolan M, Pitluck S et al (2011) Complete genome
sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NMWN-LF. J Bacteriol 193(15):4023–4024
28. Sorokin DY, Berben T, Melton ED, Overmars L, Vavourakis CD, Muyzer G (2014) Microbial
diversity and biogeochemical cycling in soda lakes. Extremophiles 18(5):791–809
29. Cogne G, Gros JB, Dussap CG (2003) Identification of a metabolic network structure representative of Arthrospira (spirulina) platensis metabolism. Biotechnol Bioeng 84(6):667–676
30. Price GD, Badger MR, Woodger FJ, Long BM (2008) Advances in understanding the
cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters,
diversity, genetic regulation and prospects for engineering into plants. J Exp Bot 59(7):1441–
1461
31. Zhilina TN, Kevbrin VV, Tourova TP, Lysenko AM, Kostrikina NA, Zavarzin GA (2005)
Clostridium alkalicellum sp. nov., an obligately alkaliphilic cellulolytic bacterium from a soda
lake in the Baikal region. Microbiology 74(5):555–566
32. Garnova ES, Krasil’nikova EN (2003) Carbohydrate metabolism of the Saccharolytic
alkaliphilic anaerobes Halonatronum saccarophilum, Amphibacillus fermentum, and
Amphibacillus tropicus. Mikrobiologiia 72(5):627–632
33. Song Y, Xue Y, Ma Y (2013) Global microarray analysis of carbohydrate use in alkaliphilic
hemicellulolytic bacterium Bacillus sp. N16-5. PLoS One 8(1):e54090
34. Detkova EN, Pusheva MA (2006) Energy metabolism in halophilic and alkaliphilic acetogenic
bacteria. Microbiology 75(1):1–11
35. Frank YA, Kadnikov VV, Likina AP, Banks D, Beletsky AV, Sen’kina EI et al (2016)
Characterization and genome analysis of the first facultatively alkaliphilic Thermodesulfovibrio
isolated from the deep terrestrial subsurface. Front Microbiol 7:2000
36. Oremland RS, Hoeft SE, Santini JM, Bano N, Hollibaugh RA, Hollibaugh JT (2002) Anaerobic
oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing
chemoautotroph, strain MLHE-1. Appl Environ Microbiol 68:4795–4802
37. Hoeft SE, Blum JS, Stolz JF, Tabita FR, Witte B, King GM et al (2007) Alkalilimnicola
ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable
of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor. Int
J Syst Evol Microbiol 57(Pt 3):504–512
Genomics of Alkaliphiles
153