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Molecular Dynamics Analysis of FAAH Complexed with Anandamide
131
perception in molecular mechanical calculations. J Mol Graph Model 25(2):247–260. doi:10.
1016/j.jmgm.2005.12.005 S1093-3263(05)00173-7 [pii]
63. Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA (2004) Development and testing of a
general amber force field. J Comput Chem 25(9):1157–1174. doi:10.1002/jcc.20035
64. Ryckaert JP, Ciccotti G, Berendsen HJ (1977) Numerical integration of the Cartesian
equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput
Phys 23:327–341
65. Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG (1995) A smooth
particle mesh Ewald method. J Chem Phys 103(19):8577–8593
66. Glaser F, Rosenberg Y, Kessel A, Pupko T, Ben-Tal N (2005) The ConSurf-HSSP database:
the mapping of evolutionary conservation among homologs onto PDB structures. Proteins 58
(3):610–617. doi:10.1002/prot.20305
67. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997)
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Nucleic Acids Res 25(17):3389–3402. doi:gka562 [pii]
68. Bairoch A, Apweiler R (1999) The SWISS-PROT protein sequence data bank and its
supplement TrEMBL in 1999. Nucleic Acids Res 27(1):49–54. doi:gkc088 [pii]
69. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high
throughput. Nucleic Acids Res 32(5):1792–1797. doi:10.1093/nar/gkh340 32/5/1792 [pii]
70. Mayrose I, Graur D, Ben-Tal N, Pupko T (2004) Comparison of site-specific rate-inference
methods for protein sequences: empirical Bayesian methods are superior. Mol Biol Evol 21
(9):1781–1791. doi:10.1093/molbev/msh194 msh194 [pii]
Molecular Dynamics Analysis of FAAH Complexed with Anandamide
131