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37. Plimpton S (1995) Fast parallel algorithms for short-range molecular-dynamics. J Comput
Phys 117(1):1–19
38. Shinoda W, DeVane R, Klein ML (2008) Coarse-grained molecular modeling of non-ionic
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39. Chiu CC et al (2010) Coarse-grained potential models for phenyl-based molecules:
II. Application to fullerenes. J Phys Chem B 114(19):6394–6400
40. DeVane R et al (2010) Coarse-grained potential models for phenyl-based molecules:
I. Parametrization using experimental data. J Phys Chem B 114(19):6386–6393
41. Shinoda W, DeVane R, Klein ML (2010) Zwitterionic lipid assemblies: molecular dynamics
studies of monolayers, bilayers, and vesicles using a new coarse grain force field. J Phys Chem
B 114(20):6836–6849
42. He XB et al (2011) Development of a coarse-grained model for the surfactant family of linear
alkylbenzene sulfonates. Biophys J 100(3):147
43. Jusufi A et al (2011) Nanoscale carbon particles and the stability of lipid bilayers. Soft Matter 7
(3):1139–1146
44. Shinoda W, DeVane R, Klein ML (2011) Coarse-grained force field for ionic surfactants.
Soft Matter 7(13):6178–6186
45. Shinoda W, DeVane R, Klein ML (2012) Computer simulation studies of self-assembling
macromolecules. Curr Opin Struct Biol 22(2):175–186
46. Meyer H (1899) Zur Theorie der Alkoholnarkose. Arch Exp Patholog Pharmakolog 42(2–4):
109–118
47. Danielli JF, Davson H (1935) A contribution to the theory of permeability of thin films. J Cell
Comp Physiol 5(4):495–508
48. Robertson JD (1960) The molecular structure and contact relationships of cell membranes.
Prog Biophys Mol Biol 10:343–418
49. Sjostrand FS, Anderssoncedergren E, Dewey MM (1958) The ultrastructure of the intercalated
discs of frog, mouse and guinea pig cardiac muscle. J Ultrastruct Res 1(3):271–287
Computer Simulation of Self-Assembling Macromolecules
107
J Phys Chem B 109(7):2469–2473
36. Marrink SJ, de Vries AH, Mark AE (2004) Coarse grained model for semiquantitative lipid
simulations. J Phys Chem B 108(2):750–760
37. Plimpton S (1995) Fast parallel algorithms for short-range molecular-dynamics. J Comput
Phys 117(1):1–19
38. Shinoda W, DeVane R, Klein ML (2008) Coarse-grained molecular modeling of non-ionic
surfactant self-assembly. Soft Matter 4(12):2454–2462
39. Chiu CC et al (2010) Coarse-grained potential models for phenyl-based molecules:
II. Application to fullerenes. J Phys Chem B 114(19):6394–6400
40. DeVane R et al (2010) Coarse-grained potential models for phenyl-based molecules:
I. Parametrization using experimental data. J Phys Chem B 114(19):6386–6393
41. Shinoda W, DeVane R, Klein ML (2010) Zwitterionic lipid assemblies: molecular dynamics
studies of monolayers, bilayers, and vesicles using a new coarse grain force field. J Phys Chem
B 114(20):6836–6849
42. He XB et al (2011) Development of a coarse-grained model for the surfactant family of linear
alkylbenzene sulfonates. Biophys J 100(3):147
43. Jusufi A et al (2011) Nanoscale carbon particles and the stability of lipid bilayers. Soft Matter 7
(3):1139–1146
44. Shinoda W, DeVane R, Klein ML (2011) Coarse-grained force field for ionic surfactants.
Soft Matter 7(13):6178–6186
45. Shinoda W, DeVane R, Klein ML (2012) Computer simulation studies of self-assembling
macromolecules. Curr Opin Struct Biol 22(2):175–186
46. Meyer H (1899) Zur Theorie der Alkoholnarkose. Arch Exp Patholog Pharmakolog 42(2–4):
109–118
47. Danielli JF, Davson H (1935) A contribution to the theory of permeability of thin films. J Cell
Comp Physiol 5(4):495–508
48. Robertson JD (1960) The molecular structure and contact relationships of cell membranes.
Prog Biophys Mol Biol 10:343–418
49. Sjostrand FS, Anderssoncedergren E, Dewey MM (1958) The ultrastructure of the intercalated
discs of frog, mouse and guinea pig cardiac muscle. J Ultrastruct Res 1(3):271–287
Computer Simulation of Self-Assembling Macromolecules
107