177
References
1. Fanning AS, Anderson JM (1996) Proteinprotein interactions: PDZ domain networks.
Curr Biol 6(11):1385–1388
2. Kuriyan J, Cowburn D (1997) Modular peptide recognition domains in eukaryotic signaling. Annu Rev Biophys Biomol Struct
26:259–288.
doi:10.1146/annurev.
biophys.26.1.259
3. Pawson T, Gish GD, Nash P (2001) SH2
domains, interaction modules and cellular wiring. Trends Cell Biol 11(12):504–511
4. Huntington JA (2005) Molecular recognition
mechanisms of thrombin. J Thromb Haemost
3(8):1861–1872. doi:10.1111/j.1538-7836.
2005.01363.x
5. Dougherty WG, Parks TD (1991) Posttranslational processing of the tobacco etch
virus 49-kDa small nuclear inclusion polyprotein: identification of an internal cleavage site
and delimitation of VPg and proteinase
domains. Virology 183(2):449–456
6. Owicki JC (2000) Fluorescence polarization
and anisotropy in high throughput screening:
perspectives and primer. J Biomol Screen
5(5):297–306
7. Velumani S, Ho HT, He F, Musthaq S,
Prabakaran M, Kwang J (2011) A novel peptide ELISA for universal detection of antibodies to human H5N1 influenza viruses. PLoS
One
6(6):e20737.
doi:10.1371/journal.
pone.0020737
8. Ayela C, Roquet F, Valera L, Granier C, Nicu
L, Pugniere M (2007) Antibody-antigenic
peptide interactions monitored by SPR and
QCM-D. A model for SPR detection of IA-2
autoantibodies in human serum. Biosens
Bioelectron 22(12):3113–3119. doi:10.1016/
j.bios.2007.01.020
9. Cummings RT, Salowe SP, Cunningham BR,
Wiltsie J, Park YW, Sonatore LM, Wisniewski D,
Douglas CM, Hermes JD, Scolnick EM (2002)
A peptide-based fluorescence resonance energy
transfer assay for Bacillus anthracis lethal factor
protease. Proc Natl Acad Sci U S A 99(10):6603–
6606. doi:10.1073/pnas.062171599
10. Guntas G, Mansell TJ, Kim JR, Ostermeier M
(2005) Directed evolution of protein switches
and their application to the creation of ligandbinding proteins. Proc Natl Acad Sci U S A
102(32):11224–11229. doi:10.1073/pnas.
0502673102
11. Li J, Gierach I, Gillies AR, Warden CD, Wood
DW (2011) Engineering and optimization of
an allosteric biosensor protein for peroxisome
proliferator-activated receptor gamma ligands.
Biosens
Bioelectron
29(1):132–139.
doi:10.1016/j.bios.2011.08.006
12. Legendre D, Soumillion P, Fastrez J (1999)
Engineering a regulatable enzyme for homogeneous
immunoassays.
Nat
Biotechnol
17(1):67–72. doi:10.1038/5243
13. Nirantar SR, Yeo KS, Chee S, Lane DP,
Ghadessy FJ (2013) A generic scaffold for conversion of peptide ligands into homogenous
biosensors. Biosens Bioelectron 47:421–428.
doi:10.1016/j.bios.2013.03.049
14. Nirantar SR, Li X, Siau JW, Ghadessy FJ (2014)
Rapid screening of protein-protein interaction
inhibitors using the protease exclusion assay.
Biosens
Bioelectron
56:250–257.
doi:10.1016/j.bios.2013.12.060
15. Kang SG, Park HU, Lee HS, Kim HT, Lee KJ
(2000) New beta -lactamase inhibitory protein
(BLIP-I) from Streptomyces exfoliatus SMF19
and its roles on the morphological differentiation. J Biol Chem 275(22):16851–16856.
doi:10.1074/jbc.M000227200
16. Kather I, Jakob RP, Dobbek H, Schmid FX
(2008) Increased folding stability of TEM-1
beta-lactamase by in vitro selection. J Mol
Biol
383(1):238–251.
doi:10.1016/j.
jmb.2008.07.082
17. Lobstein J, Emrich CA, Jeans C, Faulkner M,
Riggs P, Berkmen M (2012) SHuffle, a novel
Escherichia coli protein expression strain capable of correctly folding disulfide bonded
proteins in its cytoplasm. Microb Cell Fact
11:56. doi:10.1186/1475-2859-11-56
18. http://www.merckmillipore.com/SG/en/
product/nitrocefin, EMD_BIO-484400
19. Wang J, Zhang Z, Palzkill T, Chow DC (2007)
Thermodynamic investigation of the role of contact residues of beta-lactamase-inhibitory protein
for binding to TEM-1 beta-lactamase. J Biol
Chem 282(24):17676–17684. doi:10.1074/
jbc.M611548200
20. Reichmann D, Cohen M, Abramovich R,
Dym O, Lim D, Strynadka NC, Schreiber G
(2007) Binding hot spots in the TEM1-BLIP
interface in light of its modular architecture.
J Mol Biol 365(3):663–679. doi:10.1016/j.
jmb.2006.09.076
Sensing by Allosteric Derepression
References
1. Fanning AS, Anderson JM (1996) Proteinprotein interactions: PDZ domain networks.
Curr Biol 6(11):1385–1388
2. Kuriyan J, Cowburn D (1997) Modular peptide recognition domains in eukaryotic signaling. Annu Rev Biophys Biomol Struct
26:259–288.
doi:10.1146/annurev.
biophys.26.1.259
3. Pawson T, Gish GD, Nash P (2001) SH2
domains, interaction modules and cellular wiring. Trends Cell Biol 11(12):504–511
4. Huntington JA (2005) Molecular recognition
mechanisms of thrombin. J Thromb Haemost
3(8):1861–1872. doi:10.1111/j.1538-7836.
2005.01363.x
5. Dougherty WG, Parks TD (1991) Posttranslational processing of the tobacco etch
virus 49-kDa small nuclear inclusion polyprotein: identification of an internal cleavage site
and delimitation of VPg and proteinase
domains. Virology 183(2):449–456
6. Owicki JC (2000) Fluorescence polarization
and anisotropy in high throughput screening:
perspectives and primer. J Biomol Screen
5(5):297–306
7. Velumani S, Ho HT, He F, Musthaq S,
Prabakaran M, Kwang J (2011) A novel peptide ELISA for universal detection of antibodies to human H5N1 influenza viruses. PLoS
One
6(6):e20737.
doi:10.1371/journal.
pone.0020737
8. Ayela C, Roquet F, Valera L, Granier C, Nicu
L, Pugniere M (2007) Antibody-antigenic
peptide interactions monitored by SPR and
QCM-D. A model for SPR detection of IA-2
autoantibodies in human serum. Biosens
Bioelectron 22(12):3113–3119. doi:10.1016/
j.bios.2007.01.020
9. Cummings RT, Salowe SP, Cunningham BR,
Wiltsie J, Park YW, Sonatore LM, Wisniewski D,
Douglas CM, Hermes JD, Scolnick EM (2002)
A peptide-based fluorescence resonance energy
transfer assay for Bacillus anthracis lethal factor
protease. Proc Natl Acad Sci U S A 99(10):6603–
6606. doi:10.1073/pnas.062171599
10. Guntas G, Mansell TJ, Kim JR, Ostermeier M
(2005) Directed evolution of protein switches
and their application to the creation of ligandbinding proteins. Proc Natl Acad Sci U S A
102(32):11224–11229. doi:10.1073/pnas.
0502673102
11. Li J, Gierach I, Gillies AR, Warden CD, Wood
DW (2011) Engineering and optimization of
an allosteric biosensor protein for peroxisome
proliferator-activated receptor gamma ligands.
Biosens
Bioelectron
29(1):132–139.
doi:10.1016/j.bios.2011.08.006
12. Legendre D, Soumillion P, Fastrez J (1999)
Engineering a regulatable enzyme for homogeneous
immunoassays.
Nat
Biotechnol
17(1):67–72. doi:10.1038/5243
13. Nirantar SR, Yeo KS, Chee S, Lane DP,
Ghadessy FJ (2013) A generic scaffold for conversion of peptide ligands into homogenous
biosensors. Biosens Bioelectron 47:421–428.
doi:10.1016/j.bios.2013.03.049
14. Nirantar SR, Li X, Siau JW, Ghadessy FJ (2014)
Rapid screening of protein-protein interaction
inhibitors using the protease exclusion assay.
Biosens
Bioelectron
56:250–257.
doi:10.1016/j.bios.2013.12.060
15. Kang SG, Park HU, Lee HS, Kim HT, Lee KJ
(2000) New beta -lactamase inhibitory protein
(BLIP-I) from Streptomyces exfoliatus SMF19
and its roles on the morphological differentiation. J Biol Chem 275(22):16851–16856.
doi:10.1074/jbc.M000227200
16. Kather I, Jakob RP, Dobbek H, Schmid FX
(2008) Increased folding stability of TEM-1
beta-lactamase by in vitro selection. J Mol
Biol
383(1):238–251.
doi:10.1016/j.
jmb.2008.07.082
17. Lobstein J, Emrich CA, Jeans C, Faulkner M,
Riggs P, Berkmen M (2012) SHuffle, a novel
Escherichia coli protein expression strain capable of correctly folding disulfide bonded
proteins in its cytoplasm. Microb Cell Fact
11:56. doi:10.1186/1475-2859-11-56
18. http://www.merckmillipore.com/SG/en/
product/nitrocefin, EMD_BIO-484400
19. Wang J, Zhang Z, Palzkill T, Chow DC (2007)
Thermodynamic investigation of the role of contact residues of beta-lactamase-inhibitory protein
for binding to TEM-1 beta-lactamase. J Biol
Chem 282(24):17676–17684. doi:10.1074/
jbc.M611548200
20. Reichmann D, Cohen M, Abramovich R,
Dym O, Lim D, Strynadka NC, Schreiber G
(2007) Binding hot spots in the TEM1-BLIP
interface in light of its modular architecture.
J Mol Biol 365(3):663–679. doi:10.1016/j.
jmb.2006.09.076
Sensing by Allosteric Derepression