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41. Matsen JB, Yang S, Stein LY, Beck D, Kalyuzhnaya MG (2013) Global molecular analyses of
methane metabolism in methanotrophic alphaproteobacterium, Methylosinus trichosporium
OB3b. Part I. Transcriptomic study. Front Microbiol Chem 4:1–16
42. Yang S, Matsen JB, Konopka M, Green-Saxena A, Clubb J, Sadilek M, Orphan VJ, Beck
D, Kalyuzhnaya MG (2013) Global molecular analyses of methane metabolism in methanotrophic alphaproteobacterium, Methylosinus trichosporium OB3b. Part II. Metabolomics
and 13 C-labeling study. Front Microbiol 4:70
43. Vekeman B, Kerckhof FM, Cremers G, de Vos P, Vandamme P, Boon N, Op den Camp
HJM, Heylen K (2016) New Methyloceanibacter diversity from North Sea sediments includes
methanotroph containing solely the soluble methane monooxygenase. Environ Microbiol
18:4523–4536
44. Knief C (2015) Diversity and habitat preferences of cultivated and uncultivated aerobic
methanotrophic bacteria evaluated based on pmoA as molecular marker. Front Microbiol
6:1346
45. Krause S, van Bodegom PM, Cornwell WK, Bodelier PL (2014) Weak phylogenetic signal
in physiological traits of methane-oxidizing bacteria. J Evol Biol 27:1240–1247
46. Deutzmann JS, Wörner S, Schink B (2011) Activity and diversity of methanotrophic bacteria at
methane seeps in eastern Lake Constance sediments. Appl Environ Microbiol 77:2573–2581
47. Dumont MG, Pommerenke B, Casper P, Conrad R (2011) DNA-, rRNA- and mRNAbased stable isotope probing of aerobic methanotrophs in lake sediment. Environ Microbiol
13:1153–1167
48. Siljanen HM, Saari A, Krause S, Lensu A, Abell GC, Bodrossy L, Bodelier PL, Martikainen PJ (2011) Hydrology is reflected in the functioning and community composition
of methanotrophs in the littoral wetland of a boreal lake. FEMS Microbiol Ecol 75:430–445
49. Lüke C, Frenzel P (2011) Potential of pmoA amplicon pyrosequencing for methanotroph
diversity studies. Appl Environ Microbiol 77:6305–6309
50. Henneberger R, Lüke C, Mosberger L, Schroth MH (2012) Structure and function of methanotrophic communities in a landfill-cover soil. FEMS Microbiol Ecol 81:52–65; Dumont MG,
Lüke C, Deng YC, Frenzel P (2014) Classification of pmoA amplicon pyrosequences using
BLAST and the lowest common ancestor method in MEGAN. Front Microbiol 5:e34
51. Deng Y, Cui X, Lüke C, Dumont MG (2013) Aerobic methanotroph diversity in Riganqiao
peatlands on the Qinghai-Tibetan Plateau. Environ Microbiol Rep 5:566–574
52. Dunfield PF, Yuryev A, Senin P, Smirnova AV, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J,
Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, Liesack W, Wang L, Alam M (2007)
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.
Nature 450:879–882
53. Islam T, Jensen S, Reigstad LJ (2008) Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belong-ing to the Verrucomicrobia phylum. Proc Natl Acad Sci USA
105:300–304
54. van Teeseling MC, Pol A, Harhangi HR, van der Zwart S, Jetten MS, Op den Camp HJ, van
Niftrik L (2014) Expanding the verrucomicrobial methanotrophic world: description of three
novel species of Methylacidimicrobium gen. nov. Appl Environ Microbiol 80:6782–6791
55. Khadem AF, Pol A, Wieczorek A, Mohammadi SS, Francoijs KJ, Stunnenberg HG, Jetten MS,
Op den Camp HJ (2011) Autotrophic methanotrophy in Verrucomicrobia: Methylacidiphilum
fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation. J
Bacteriol 193:4438–4446
56. McDonald IR, Bodrossy L, Chen Y, Murrell JC (2008) Molecular ecology techniques for the
study of aerobic methanotrophs. Appl Environ Microbiol 74:1305–1315
57. Dedysh SN, Knief C, Dunfield PF (2005) Methylocella species are facultatively methanotrophic. J Bacteriol 187(13, July):4665–4670
58. Theisen AR, Ali MH, Radajewski S, Dumont MG, Dunfield PF, McDonald IR, Dedysh
SN, Miguez CB, Murrell JC (2005) Regulation of methane oxidation in the facultative
methanotroph Methylocella silvestris BL2. Mol Microbiol 58:682–692