18. Ryu H, Kim K, Cho H, Hwang I (2010) Predominant actions of cytosolic BSU1 and
nuclear BIN2 regulate subcellular localization
of BES1 in brassinosteroid signaling. Mol Cells
29(3):291–296. https://doi.org/10.1007/
s10059-010-0034-y
19. Schweighofer A, Meskiene I (2015) Phosphatases in plants. Methods Mol Biol 1306:25–46.
https://doi.org/10.1007/978-1-4939-26480_2
20. Shiu SH, Bleecker AB (2003) Expansion of the
receptor-like kinase/Pelle gene family and
receptor-like proteins in Arabidopsis. Plant
Physiol 132(2):530–543. https://doi.org/10.
1104/pp.103.021964
21. Tran HT, Plaxton WC (2008) Proteomic analysis of alterations in the secretome of Arabidopsis thaliana suspension cells subjected to
nutritional phosphate deficiency. Proteomics
8.
https://doi.org/10.1002/pmic.
200800292
22. Tyanova S, Temu T, Cox J (2016) The MaxQuant computational platform for mass
spectrometry-based shotgun proteomics. Nat
Protoc 11(12):2301–2319. https://doi.org/
10.1038/nprot.2016.136
23. Tyanova S, Temu T, Sinitcyn P, Carlson A,
Hein MY, Geiger T, Mann M, Cox J (2016)
The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat
Methods 13(9):731–740. https://doi.org/
10.1038/nmeth.3901
24. Wang R, Liu M, Yuan M, Oses-Prieto JA,
Cai X, Sun Y, Burlingame AL, Wang ZY,
Tang W (2016) The brassinosteroid-activated
BRI1 receptor kinase is switched off by dephosphorylation mediated by cytoplasm-localized
PP2A B’ subunits. Mol Plant 9(1):148–157.
https://doi.org/10.1016/j.molp.2015.10.
007
25. Wang X, Kota U, He K, Blackburn K, Li J,
Goshe MB, Huber SC, Clouse SD (2008)
Sequential transphosphorylation of the BRI1/
BAK1 receptor kinase complex impacts early
events in brassinosteroid signaling. Dev Cell
15(2):220–235. https://doi.org/10.1016/j.
devcel.2008.06.011
26. Wang ZY, Nakano T, Gendron J, He J,
Chen M, Vafeados D, Yang Y et al (2002)
Nuclear-localized
BZR1
mediates
brassinosteroid-induced growth and feedback
suppression of brassinosteroid biosynthesis.
Dev Cell 2(4):505–513
27. Wu XN, Xi L, Pertl-Obermeyer H, Li Z, Chu
LC, Schulze WX (2017) Highly efficient
single-step enrichment of low abundance phosphopeptides from plant membrane preparations. Front Plant Sci 8:1673. https://doi.
org/10.3389/fpls.2017.01673
28. Wu X, Sanchez-Rodriguez C, PertlObermeyer H, Obermeyer G, Schulze WX
(2013) Sucrose-induced receptor kinase
SIRK1 regulates a plasma membrane aquaporin
in Arabidopsis. Mol Cell Proteomics 12
(10):2856–2873
29. Wu X, Sklodowski K, Encke B, Schulze WX
(2014) A kinase-phosphatase signaling module
with BSK8 and BSL2 involved in regulation of
sucrose-phosphate synthase. J Proteome Res
13:3397–3409
30. Zhang H, Zhou H, Berke L, Heck AJ,
Mohammed S, Scheres B, Menke FL (2013)
Quantitative phosphoproteomics after auxinstimulated lateral root induction identifies an
SNX1 protein phosphorylation site required
for growth. Mol Cell Proteomics 12
(5):1158–1169
31. Zulawski M, Schulze G, Braginets R,
Hartmann S, Schulze WX (2014) The Arabidopsis Kinome: phylogeny and evolutionary
insights into functional diversification. BMC
Genomics 15:548. https://doi.org/10.1186/
1471-2164-15-548
32. Zulawski M, Schulze WX (2015) The plant
kinome. Methods Mol Biol 1306:1–23.
https://doi.org/10.1007/978-1-4939-26480_1
Plant Membranes Phosphoproteome
451
nuclear BIN2 regulate subcellular localization
of BES1 in brassinosteroid signaling. Mol Cells
29(3):291–296. https://doi.org/10.1007/
s10059-010-0034-y
19. Schweighofer A, Meskiene I (2015) Phosphatases in plants. Methods Mol Biol 1306:25–46.
https://doi.org/10.1007/978-1-4939-26480_2
20. Shiu SH, Bleecker AB (2003) Expansion of the
receptor-like kinase/Pelle gene family and
receptor-like proteins in Arabidopsis. Plant
Physiol 132(2):530–543. https://doi.org/10.
1104/pp.103.021964
21. Tran HT, Plaxton WC (2008) Proteomic analysis of alterations in the secretome of Arabidopsis thaliana suspension cells subjected to
nutritional phosphate deficiency. Proteomics
8.
https://doi.org/10.1002/pmic.
200800292
22. Tyanova S, Temu T, Cox J (2016) The MaxQuant computational platform for mass
spectrometry-based shotgun proteomics. Nat
Protoc 11(12):2301–2319. https://doi.org/
10.1038/nprot.2016.136
23. Tyanova S, Temu T, Sinitcyn P, Carlson A,
Hein MY, Geiger T, Mann M, Cox J (2016)
The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat
Methods 13(9):731–740. https://doi.org/
10.1038/nmeth.3901
24. Wang R, Liu M, Yuan M, Oses-Prieto JA,
Cai X, Sun Y, Burlingame AL, Wang ZY,
Tang W (2016) The brassinosteroid-activated
BRI1 receptor kinase is switched off by dephosphorylation mediated by cytoplasm-localized
PP2A B’ subunits. Mol Plant 9(1):148–157.
https://doi.org/10.1016/j.molp.2015.10.
007
25. Wang X, Kota U, He K, Blackburn K, Li J,
Goshe MB, Huber SC, Clouse SD (2008)
Sequential transphosphorylation of the BRI1/
BAK1 receptor kinase complex impacts early
events in brassinosteroid signaling. Dev Cell
15(2):220–235. https://doi.org/10.1016/j.
devcel.2008.06.011
26. Wang ZY, Nakano T, Gendron J, He J,
Chen M, Vafeados D, Yang Y et al (2002)
Nuclear-localized
BZR1
mediates
brassinosteroid-induced growth and feedback
suppression of brassinosteroid biosynthesis.
Dev Cell 2(4):505–513
27. Wu XN, Xi L, Pertl-Obermeyer H, Li Z, Chu
LC, Schulze WX (2017) Highly efficient
single-step enrichment of low abundance phosphopeptides from plant membrane preparations. Front Plant Sci 8:1673. https://doi.
org/10.3389/fpls.2017.01673
28. Wu X, Sanchez-Rodriguez C, PertlObermeyer H, Obermeyer G, Schulze WX
(2013) Sucrose-induced receptor kinase
SIRK1 regulates a plasma membrane aquaporin
in Arabidopsis. Mol Cell Proteomics 12
(10):2856–2873
29. Wu X, Sklodowski K, Encke B, Schulze WX
(2014) A kinase-phosphatase signaling module
with BSK8 and BSL2 involved in regulation of
sucrose-phosphate synthase. J Proteome Res
13:3397–3409
30. Zhang H, Zhou H, Berke L, Heck AJ,
Mohammed S, Scheres B, Menke FL (2013)
Quantitative phosphoproteomics after auxinstimulated lateral root induction identifies an
SNX1 protein phosphorylation site required
for growth. Mol Cell Proteomics 12
(5):1158–1169
31. Zulawski M, Schulze G, Braginets R,
Hartmann S, Schulze WX (2014) The Arabidopsis Kinome: phylogeny and evolutionary
insights into functional diversification. BMC
Genomics 15:548. https://doi.org/10.1186/
1471-2164-15-548
32. Zulawski M, Schulze WX (2015) The plant
kinome. Methods Mol Biol 1306:1–23.
https://doi.org/10.1007/978-1-4939-26480_1
Plant Membranes Phosphoproteome
451