References
1. Gingras AC, Abe KT, Raught B (2019) Getting to know the neighborhood: using
proximity-dependent biotinylation to characterize protein complexes and map organelles.
Curr Opin Chem Biol 48:44–54
2. Roux KJ, Kim DI, Raida M et al (2012) A
promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in
mammalian cells. J Cell Biol 196:801–810
3. Roux KJ (2013) Marked by association: techniques for proximity-dependent labeling of
proteins in eukaryotic cells. Cell Mol Life Sci
70:3657–3664
4. Kim DI, Birendra KC, Zhu W et al (2014)
Probing nuclear pore complex architecture
with proximity-dependent biotinylation. Proc
Natl Acad Sci U S A 111:e2453–e2461
5. Kim DI, Roux KJ (2016) Filling the void:
proximity-based labeling of proteins in living
cells. Trends Cell Biol 26:804–817
6. Li P, Li J, Wang L et al (2017) Proximity
labeling of interacting proteins: application of
BioID as a discovery tool. Proteomics 17:1–10
7. Coyaud E, Ranadheera C, Cheng D et al
(2018) Global interactomics uncovers extensive organellar targeting by Zika virus. Mol
Cell Proteomics 17:2242–2255
8. Youn JY, Dunham WH, Hong SJ et al (2018)
High-density proximity mapping reveals the
subcellular organization of mRNA-associated
granules and bodies. Mol Cell 69:517–532
9. Opitz N, Schmitt K, Hofer-Pretz V et al (2017)
Capturing the Asc1p/ receptor for activated C
kinase 1 (RACK1) microenvironment at the
head region of the 40S ribosome with quantitative BioID in yeast. Mol Cell Proteomics
16:2199–2218
10. Huber S, Karagenc T, Ritler D et al (2018)
Identification and characterisation of a Theileria annulata proline-rich microtubule and
SH3 domain-interacting protein (TaMISHIP)
that forms a complex with CLASP1, EB1, and
CD2AP at the schizont surface. Cell Microbiol
20:e12838
11. Khosh-Naucke M, Becker J, Mese ´n-Ramı ´rez P
et al (2018) Identification of novel parasitophorous vacuole proteins in P. falciparum parasites using BioID. Int J Med Microbiol
308:13–24
12. Lin Q, Zhou Z, Luo W et al (2017) Screening
of proximal and interacting proteins in rice
protoplasts by proximity-dependent biotinylation. Front Plant Sci 8:749
13. Khan M, Youn JY, Gingras AC et al (2018) In
planta proximity dependent biotin identification (BioID). Sci Rep 8:9212
14. Conlan B, Stoll T, Gorman JJ et al (2018)
Development of a rapid in planta BioID system
as a probe for plasma membrane-associated
immunity proteins. Front Plant Sci 9:1882
15. Branon TC, Bosch JA, Sanchez AD et al
(2018) Efficient proximity labeling in living
cells and organisms with TurboID. Nat Biotechnol 36:880–898
16. Zhang Y, Song G, Lal NK et al (2019)
TurboID-based proximity labeling reveals that
UBR7 is a regulator of N NLR immune
receptor-mediated immunity. Nat Commun
10:3252
17. Mair A, Xu S, Branon TC et al (2019) Proximity labeling of protein complexes and cell typespecific organellar proteomes in Arabidopsis
enabled by TurboID. BioRxiv. https://doi.
org/10.1101/629675
18. Kim T-W, Park Chan H, Hsu C-C et al (2019)
Application of TurboID-mediated proximity
labeling for mapping a GSK3 kinase signalling
network in Arabidopsis. BioRxiv. https://doi.
org/10.1101/636324
19. Aoyama T, Chua N (1997) A glucocorticoidmediated transcriptional induction system in
transgenic plants. Plant J 11:605–612
440
Madiha Khan et al.
1. Gingras AC, Abe KT, Raught B (2019) Getting to know the neighborhood: using
proximity-dependent biotinylation to characterize protein complexes and map organelles.
Curr Opin Chem Biol 48:44–54
2. Roux KJ, Kim DI, Raida M et al (2012) A
promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in
mammalian cells. J Cell Biol 196:801–810
3. Roux KJ (2013) Marked by association: techniques for proximity-dependent labeling of
proteins in eukaryotic cells. Cell Mol Life Sci
70:3657–3664
4. Kim DI, Birendra KC, Zhu W et al (2014)
Probing nuclear pore complex architecture
with proximity-dependent biotinylation. Proc
Natl Acad Sci U S A 111:e2453–e2461
5. Kim DI, Roux KJ (2016) Filling the void:
proximity-based labeling of proteins in living
cells. Trends Cell Biol 26:804–817
6. Li P, Li J, Wang L et al (2017) Proximity
labeling of interacting proteins: application of
BioID as a discovery tool. Proteomics 17:1–10
7. Coyaud E, Ranadheera C, Cheng D et al
(2018) Global interactomics uncovers extensive organellar targeting by Zika virus. Mol
Cell Proteomics 17:2242–2255
8. Youn JY, Dunham WH, Hong SJ et al (2018)
High-density proximity mapping reveals the
subcellular organization of mRNA-associated
granules and bodies. Mol Cell 69:517–532
9. Opitz N, Schmitt K, Hofer-Pretz V et al (2017)
Capturing the Asc1p/ receptor for activated C
kinase 1 (RACK1) microenvironment at the
head region of the 40S ribosome with quantitative BioID in yeast. Mol Cell Proteomics
16:2199–2218
10. Huber S, Karagenc T, Ritler D et al (2018)
Identification and characterisation of a Theileria annulata proline-rich microtubule and
SH3 domain-interacting protein (TaMISHIP)
that forms a complex with CLASP1, EB1, and
CD2AP at the schizont surface. Cell Microbiol
20:e12838
11. Khosh-Naucke M, Becker J, Mese ´n-Ramı ´rez P
et al (2018) Identification of novel parasitophorous vacuole proteins in P. falciparum parasites using BioID. Int J Med Microbiol
308:13–24
12. Lin Q, Zhou Z, Luo W et al (2017) Screening
of proximal and interacting proteins in rice
protoplasts by proximity-dependent biotinylation. Front Plant Sci 8:749
13. Khan M, Youn JY, Gingras AC et al (2018) In
planta proximity dependent biotin identification (BioID). Sci Rep 8:9212
14. Conlan B, Stoll T, Gorman JJ et al (2018)
Development of a rapid in planta BioID system
as a probe for plasma membrane-associated
immunity proteins. Front Plant Sci 9:1882
15. Branon TC, Bosch JA, Sanchez AD et al
(2018) Efficient proximity labeling in living
cells and organisms with TurboID. Nat Biotechnol 36:880–898
16. Zhang Y, Song G, Lal NK et al (2019)
TurboID-based proximity labeling reveals that
UBR7 is a regulator of N NLR immune
receptor-mediated immunity. Nat Commun
10:3252
17. Mair A, Xu S, Branon TC et al (2019) Proximity labeling of protein complexes and cell typespecific organellar proteomes in Arabidopsis
enabled by TurboID. BioRxiv. https://doi.
org/10.1101/629675
18. Kim T-W, Park Chan H, Hsu C-C et al (2019)
Application of TurboID-mediated proximity
labeling for mapping a GSK3 kinase signalling
network in Arabidopsis. BioRxiv. https://doi.
org/10.1101/636324
19. Aoyama T, Chua N (1997) A glucocorticoidmediated transcriptional induction system in
transgenic plants. Plant J 11:605–612
440
Madiha Khan et al.