86
Carpenter, E. J., & McCarthy, J. J. (1975). Nitrogen fixation and uptake of combined nitrogenous
nutrients by Oscillatoria (Trichodesmium) thiebautii in the western Sargasso Sea. Limnology
and Oceanography, 20, 389–401.
Carpenter, E. J., & Price, C. C. (1977). Nitrogen fixation, distribution, and production of Oscillatoria
(Trichodesmium) in the northwestern Atlantic Ocean and Caribbean Sea. Limnology and
Oceanography, 22, 60–72.
Carpenter, E. J., Subramaniam, A., & Capone, D. G. (2004). Biomass and primary productivity of
the cyanobacterium, Trichodesmium spp., in the southwestern tropical N Atlantic Ocean. DeepSea Research Part I, 51, 173–203.
Cassar, N., Bellenger, J.-P., Jackson, R. B., Karr, J., & Barnett, B. A. (2012). N 2 fixation estimates
in real-time by cavity ring-down laser absorption spectroscopy. Oecologia, 168(2), 335–342.
Cassar, N., Tang, W., Gabathuler, H., & Huang, K. (2018). Method for high frequency underway
N 2 fixation measurements: Flow-through incubation acetylene reduction assays by cavity ring
down laser absorption spectroscopy (FARACAS). Analytical Chemistry, 90(4), 2839–2851.
https://doi.org/10.1021/acs.analchem.7b04977.
Chen, Y. B., Mellon, M. T., & Zehr, J. P. (1998). Circadian rhythm of nitrogenase gene expression
in the diazotrophic filamentous nonheterocystous cyanobacterium Trichodesmium sp. Strain
IMS 101. Journal of Bacteriology, 180, 3598–3605.
Chen, Y. B., Dominic, B., Zani, S., Mellon, M. T., & Zehr, J. P. (1999). Expression of photosynthesis genes in relation to nitrogen fixation in the diazotrophic filamentous nonheterocystous
cyanobacterium Trichodesmium sp. IMS 101. Plant Molecular Biology, 41(1), 89–104.
Church, M., Jenkins, B., Karl, D., & Zehr, J. (2005a). Vertical distributions of nitrogen-fixing phylotypes at Stn ALOHA in the oligotrophic North Pacific Ocean. Aquatic Microbial Ecology, 38,
3–14. https://doi.org/10.3354/ame038003.
Church, M. J., Short, C. M., Jenkins, B. D., Karl, D. M., & Zehr, J. P. (2005b). Temporal patterns
of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean. Applied and
Environmental Microbiology, 71(9), 5362–5370.
Coles, V., Stukel, M., Brooks, M., Burd, A., Crump, B., et al. (2017). Ocean biogeochemistry modeled with emergent trait-based genomics. Science, 358(6367), 1149–1154.
Dabundo, R., Lehmann, M. F., Treibergs, L., Tobias, C. R., Altabet, M. A., et al. (2014). The
contamination of commercial
15 N 2 gas stocks with
15
N–labeled nitrate and ammonium and
consequences for nitrogen fixation measurements. PLoS One, 9(10), e110335.
Dekas, A. E., & Orphan, V. J. (2011). Identification of diazotrophic microorganisms in marine
sediment via fluorescence in situ hybridization coupled to nanoscale secondary ion mass spectrometry (FISH-NanoSIMS). In Methods in enzymology (Vol. 486, pp. 281–305). Amsterdam:
Elsevier.
Dekas, A., Connon, S. A., Chadwick, G. L., Trembath-Reichert, E., & Orphan, V. J. (2016).
Activity and interactions of methane seep microorganisms assessed by parallel transcription
and FISH-NanoSIMS analyses. The ISME Journal, 10(3), 678.
Delmont, T. O., Quince, C., Shaiber, A., Esen, Ö. C., Lee, S. T., et al. (2018). Nitrogen-fixing
populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.
Nature Microbiology, 3(7), 804.
DeLong, E. F. (2002). Microbial population genomics and ecology. Current Opinion in
Microbiology, 5(5), 520–524.
DeLong, E. F., & Karl, D. M. (2005). Genomic perspectives in microbial oceanography. Nature,
437(7057), 336–342.
Deutsch, C., Sarmiento, J. L., Sigman, D. M., Gruber, N., & Dunne, J. P. (2007). Spatial coupling of nitrogen inputs and losses in the ocean. Nature, 445, 163–167. https://doi.org/10.1038/
nature05392.
Dilworth, M. J., Eady, R. R., Robson, R. L., & Miller, R. W. (1987). Ethane formation from acetylene as a potential test for vanadium nitrogenase in vivo. Nature, 327(6118), 167.
Dinnat, E. P., & Yin, X. (2019). Sea surface salinity remote sensing. Basel: MDPI.
5 Measurements of Organism Abundances and Activities
Carpenter, E. J., & McCarthy, J. J. (1975). Nitrogen fixation and uptake of combined nitrogenous
nutrients by Oscillatoria (Trichodesmium) thiebautii in the western Sargasso Sea. Limnology
and Oceanography, 20, 389–401.
Carpenter, E. J., & Price, C. C. (1977). Nitrogen fixation, distribution, and production of Oscillatoria
(Trichodesmium) in the northwestern Atlantic Ocean and Caribbean Sea. Limnology and
Oceanography, 22, 60–72.
Carpenter, E. J., Subramaniam, A., & Capone, D. G. (2004). Biomass and primary productivity of
the cyanobacterium, Trichodesmium spp., in the southwestern tropical N Atlantic Ocean. DeepSea Research Part I, 51, 173–203.
Cassar, N., Bellenger, J.-P., Jackson, R. B., Karr, J., & Barnett, B. A. (2012). N 2 fixation estimates
in real-time by cavity ring-down laser absorption spectroscopy. Oecologia, 168(2), 335–342.
Cassar, N., Tang, W., Gabathuler, H., & Huang, K. (2018). Method for high frequency underway
N 2 fixation measurements: Flow-through incubation acetylene reduction assays by cavity ring
down laser absorption spectroscopy (FARACAS). Analytical Chemistry, 90(4), 2839–2851.
https://doi.org/10.1021/acs.analchem.7b04977.
Chen, Y. B., Mellon, M. T., & Zehr, J. P. (1998). Circadian rhythm of nitrogenase gene expression
in the diazotrophic filamentous nonheterocystous cyanobacterium Trichodesmium sp. Strain
IMS 101. Journal of Bacteriology, 180, 3598–3605.
Chen, Y. B., Dominic, B., Zani, S., Mellon, M. T., & Zehr, J. P. (1999). Expression of photosynthesis genes in relation to nitrogen fixation in the diazotrophic filamentous nonheterocystous
cyanobacterium Trichodesmium sp. IMS 101. Plant Molecular Biology, 41(1), 89–104.
Church, M., Jenkins, B., Karl, D., & Zehr, J. (2005a). Vertical distributions of nitrogen-fixing phylotypes at Stn ALOHA in the oligotrophic North Pacific Ocean. Aquatic Microbial Ecology, 38,
3–14. https://doi.org/10.3354/ame038003.
Church, M. J., Short, C. M., Jenkins, B. D., Karl, D. M., & Zehr, J. P. (2005b). Temporal patterns
of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean. Applied and
Environmental Microbiology, 71(9), 5362–5370.
Coles, V., Stukel, M., Brooks, M., Burd, A., Crump, B., et al. (2017). Ocean biogeochemistry modeled with emergent trait-based genomics. Science, 358(6367), 1149–1154.
Dabundo, R., Lehmann, M. F., Treibergs, L., Tobias, C. R., Altabet, M. A., et al. (2014). The
contamination of commercial
15 N 2 gas stocks with
15
N–labeled nitrate and ammonium and
consequences for nitrogen fixation measurements. PLoS One, 9(10), e110335.
Dekas, A. E., & Orphan, V. J. (2011). Identification of diazotrophic microorganisms in marine
sediment via fluorescence in situ hybridization coupled to nanoscale secondary ion mass spectrometry (FISH-NanoSIMS). In Methods in enzymology (Vol. 486, pp. 281–305). Amsterdam:
Elsevier.
Dekas, A., Connon, S. A., Chadwick, G. L., Trembath-Reichert, E., & Orphan, V. J. (2016).
Activity and interactions of methane seep microorganisms assessed by parallel transcription
and FISH-NanoSIMS analyses. The ISME Journal, 10(3), 678.
Delmont, T. O., Quince, C., Shaiber, A., Esen, Ö. C., Lee, S. T., et al. (2018). Nitrogen-fixing
populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.
Nature Microbiology, 3(7), 804.
DeLong, E. F. (2002). Microbial population genomics and ecology. Current Opinion in
Microbiology, 5(5), 520–524.
DeLong, E. F., & Karl, D. M. (2005). Genomic perspectives in microbial oceanography. Nature,
437(7057), 336–342.
Deutsch, C., Sarmiento, J. L., Sigman, D. M., Gruber, N., & Dunne, J. P. (2007). Spatial coupling of nitrogen inputs and losses in the ocean. Nature, 445, 163–167. https://doi.org/10.1038/
nature05392.
Dilworth, M. J., Eady, R. R., Robson, R. L., & Miller, R. W. (1987). Ethane formation from acetylene as a potential test for vanadium nitrogenase in vivo. Nature, 327(6118), 167.
Dinnat, E. P., & Yin, X. (2019). Sea surface salinity remote sensing. Basel: MDPI.
5 Measurements of Organism Abundances and Activities