63. Amann R, Springer N, Schoenhuber W, Ludwig W, Schmid EN, Mueller KD, Michel R
(1997) Obligate intracellular bacterial parasites of Acanthamoebae related to Chlamydia spp.
Appl Environ Microbiol 63:115–121
64. Fritsche TR, Horn M, Wagner M, Herwig RP, Schleifer KH, Gautom RK (2000) Phylogenetic
diversity among geographically dispersed Chlamydiales endosymbionts recovered from clinical and environmental isolates of Acanthamoeba spp. Appl Environ Microbiol 66:2613–2619
65. Newton RJ, Mclellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML (2015)
Sewage reflects the microbiomes of human populations. MBio 6:02574–02514
66. Shanks OC, Newton RJ, Kelty CA, Huse SM, Sogin ML, Mclellan SL (2013) Comparison of
the microbial community structures of untreated wastewaters from different geographic
locales. Appl Environ Microbiol 79:2906–2913
67. Vaz-Moreira I, Nunes OC, Manaia CM (2014) Bacterial diversity and antibiotic resistance in
water habitats: searching the links with the human microbiome. FEMS Microbiol Rev
38:761–778
68. Becerra-Castro C, Lopes AR, Vaz-Moreira I, Silva EF, Manaia CM, Nunes OC (2015)
Wastewater reuse in irrigation: a microbiological perspective on implications in soil fertility
and human and environmental health. Environ Int 75:117–135
69. Bush EA, Hong C, Stromberg EL (2003) Fluctuations of Phytophthora and Pythium spp. in
components of a recycling irrigation system. Plant Dis St Paul 87:1500–1506
70. Hong CX, Moorman GW (2005) Plant pathogens in irrigation water: challenges and opportunities. Rev Plant Sci 24:189–208
71. Dudley DJ, Guentzel MN, Ibarra MJ, Moore BE, Sagik BP (1980) Enumeration of potentially
pathogenic bacteria from sewage sludges. Appl Environ Microbiol 39:118–126
72. Stewart-Wade SM (2011) Plant pathogens in recycled irrigation water in commercial plant
nurseries and greenhouses: their detection and management. Irrig Sci 29:267–297
73. Otawa K, Lee SH, Yamazoe A, Onuki M, Satoh H, Mino T (2007) Abundance, diversity, and
dynamics of viruses on microorganisms in activated sludge processes. Microb Ecol
53:143–152
74. Wommack KE, Colwell RR (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol
Mol Biol Rev 64:69–114
75. Wu Q, Liu W-T (2009) Determination of virus abundance, diversity and distribution in a
municipal wastewater treatment plant. Water Res 43:1101–1109
76. Tamaki H, Zhang R, Angly FE, Nakamura S, Hong PY, Yasunaga T, Kamagata Y, Liu WT
(2012) Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical
climate. Environ Microbiol 14:441–452
77. Al-Lahham O, El-Assi NM, Fayyad M (2003) Impact of treated wastewater irrigation on
quality attributes and contamination of tomato fruit. Agric Water Manag 61:51–62
78. Rosario K, Nilsson C, Lim YW, Ruan Y, Breitbart M (2009) Metagenomic analysis of viruses
in reclaimed water. Environ Microbiol 11:2806–2820
79. Boehm AB, Soller JA, Shanks OC (2015) Human-associated fecal quantitative polymerase
chain reaction measurements and simulated risk of gastrointestinal illness in recreational
waters contaminated with raw sewage. Environ Sci Technol Lett 2:270–275
80. Karkman A, Johnson TA, Lyra C, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M (2016)
High-throughput quantification of antibiotic resistance genes from an urban wastewater
treatment plant. FEMS Microbiol Ecol 92(3)
81. Liu CK, Hoekstra AY, Gerbens-Leenes W (2012) Past and future trends in grey water
footprints of anthropogenic nitrogen and phosphorus inputs to major world rivers. http://
edepot.wur.nl/188765. Accessed 2 Jun 2019
82. Gozlan I, Rotstein A, Avisar D (2013) Amoxicillin-degradation products formed under
controlled environmental conditions: identification and determination in the aquatic environment. Chemosphere 91:985–992
Environmental, Economic, and Ethical Assessment of the Treated Wastewater and. . .
77
(1997) Obligate intracellular bacterial parasites of Acanthamoebae related to Chlamydia spp.
Appl Environ Microbiol 63:115–121
64. Fritsche TR, Horn M, Wagner M, Herwig RP, Schleifer KH, Gautom RK (2000) Phylogenetic
diversity among geographically dispersed Chlamydiales endosymbionts recovered from clinical and environmental isolates of Acanthamoeba spp. Appl Environ Microbiol 66:2613–2619
65. Newton RJ, Mclellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML (2015)
Sewage reflects the microbiomes of human populations. MBio 6:02574–02514
66. Shanks OC, Newton RJ, Kelty CA, Huse SM, Sogin ML, Mclellan SL (2013) Comparison of
the microbial community structures of untreated wastewaters from different geographic
locales. Appl Environ Microbiol 79:2906–2913
67. Vaz-Moreira I, Nunes OC, Manaia CM (2014) Bacterial diversity and antibiotic resistance in
water habitats: searching the links with the human microbiome. FEMS Microbiol Rev
38:761–778
68. Becerra-Castro C, Lopes AR, Vaz-Moreira I, Silva EF, Manaia CM, Nunes OC (2015)
Wastewater reuse in irrigation: a microbiological perspective on implications in soil fertility
and human and environmental health. Environ Int 75:117–135
69. Bush EA, Hong C, Stromberg EL (2003) Fluctuations of Phytophthora and Pythium spp. in
components of a recycling irrigation system. Plant Dis St Paul 87:1500–1506
70. Hong CX, Moorman GW (2005) Plant pathogens in irrigation water: challenges and opportunities. Rev Plant Sci 24:189–208
71. Dudley DJ, Guentzel MN, Ibarra MJ, Moore BE, Sagik BP (1980) Enumeration of potentially
pathogenic bacteria from sewage sludges. Appl Environ Microbiol 39:118–126
72. Stewart-Wade SM (2011) Plant pathogens in recycled irrigation water in commercial plant
nurseries and greenhouses: their detection and management. Irrig Sci 29:267–297
73. Otawa K, Lee SH, Yamazoe A, Onuki M, Satoh H, Mino T (2007) Abundance, diversity, and
dynamics of viruses on microorganisms in activated sludge processes. Microb Ecol
53:143–152
74. Wommack KE, Colwell RR (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol
Mol Biol Rev 64:69–114
75. Wu Q, Liu W-T (2009) Determination of virus abundance, diversity and distribution in a
municipal wastewater treatment plant. Water Res 43:1101–1109
76. Tamaki H, Zhang R, Angly FE, Nakamura S, Hong PY, Yasunaga T, Kamagata Y, Liu WT
(2012) Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical
climate. Environ Microbiol 14:441–452
77. Al-Lahham O, El-Assi NM, Fayyad M (2003) Impact of treated wastewater irrigation on
quality attributes and contamination of tomato fruit. Agric Water Manag 61:51–62
78. Rosario K, Nilsson C, Lim YW, Ruan Y, Breitbart M (2009) Metagenomic analysis of viruses
in reclaimed water. Environ Microbiol 11:2806–2820
79. Boehm AB, Soller JA, Shanks OC (2015) Human-associated fecal quantitative polymerase
chain reaction measurements and simulated risk of gastrointestinal illness in recreational
waters contaminated with raw sewage. Environ Sci Technol Lett 2:270–275
80. Karkman A, Johnson TA, Lyra C, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M (2016)
High-throughput quantification of antibiotic resistance genes from an urban wastewater
treatment plant. FEMS Microbiol Ecol 92(3)
81. Liu CK, Hoekstra AY, Gerbens-Leenes W (2012) Past and future trends in grey water
footprints of anthropogenic nitrogen and phosphorus inputs to major world rivers. http://
edepot.wur.nl/188765. Accessed 2 Jun 2019
82. Gozlan I, Rotstein A, Avisar D (2013) Amoxicillin-degradation products formed under
controlled environmental conditions: identification and determination in the aquatic environment. Chemosphere 91:985–992
Environmental, Economic, and Ethical Assessment of the Treated Wastewater and. . .
77