Soil Microbiological Recycling and the Virome Role in a Hectare Grassland
51
96. Hayes, S., Mahony, J., Nauta, A., Van Sinderen, D.: Metagenomic approaches to assess bacteriophages in various environmental niches. Viruses 9, E127 (2017). https://doi.org/10.3390/
v9060127
97. Hellweger, F.L.: Carrying photosynthesis genes increases ecological fitness of cyanophage in
silico. Environ. Microbiol. 11, 1386–1394 (2009). https://doi.org/10.1111/j.1462-2920.2009.
01866.x. Epub 2009 Jan 23
98. Herzog, S., Wemheuer, F., Wemheuer, B., Daniel, R.: Effects of fertilization and sampling time
on composition and diversity of entire and active bacterial communities in German grassland
soils. PLoS ONE 10, e0145575 (2015). https://doi.org/10.1371/journal.pone.0145575
99. Hillesland, K.L., Stahl, D.A., Harcombe, W.: Measuring the cost of microbial mutualism.
Microbe 6, 427–434 (2011)
100. Hirmas, D.R., Gimenez, D., Nemes, A., et al.: Climate—induced changes in continental—
scale soil macroporosity may intensify water cycle. Nature 651, 100–103 (2018). https://doi.
org/10.1038/s41596.018.0463.x
101. Hobbie, J.E., Hobbie, E.A.: Microbes in nature are limited by carbon and energy: the starvingsurvival lifestyle in soil and consequences for estimating microbial rates. Front. Microbiol.
(2013). https://doi.org/10.3389/fmicb.2013.00324
102. Howard-Varona, C., Hargreaves, K.R., Abedon, S.T., Sullivan, M.B.: Lysogeny in nature:
mechanisms, impact and ecology of temperate phages. ISME J. 11, 1511–1520 (2017). https://
doi.org/10.1038/ismej.2017.16
103. Hu, Z., Wessels, H.J.C.T., van Alen, T., Jetten, M.S.M., Kartal, B.: Nitric oxide-dependent
anaerobic ammonium oxidation. Nat. Commum. 10, 1244 (2019). https://doi.org/10.1038/s41
467-019-09268-w
104. Hug, L.A., Baker, B.J., Anantharaman, K., Brown, C.T., Probst, A.J., Castelle, C.J., Butterfield, C.N., Hernsdorf, A., Amano, Y., Ise, K., Suzuki, Y., Dudek, N., Relman Finstad, K.M.,
Amundson, R., Thomas, B.C., Banfield, J.F.: A new view of the tree of life. Nat. Microbiol.
1, 16048 (2016). https://doi.org/10.1038/nmicrobiol.2016.48
105. Humphrey, P.T., Nguyen, T.T., Villalobos, M.M., Whiteman, N.K.: Diversity and abundance
of phyllosphere bacteria are linked to insect herbivory. Mol. Ecol. 23, 1497–1515 (2014).
https://doi.org/10.1111/mec.12657
106. Humphreys, I.R., Sebastian, S.: Novel viral vectors in infectious diseases. Immunology 153,
1–9 (2018). https://doi.org/10.1111/imm.12829
107. Hyman, P., Abedon, S.T. (eds.): Viruses of Microorganisms. Caister Academic Press (2018).
https://doi.org/10.21775/9781910190852
108. Igler, C., Abedon, S.T.: Commentary: a host-produced quorum-sensing autoinducer controls
a phage lysis-lysogeny decision. Front. Microbiol. 10, 1171 (2019). https://doi.org/10.3389/
fmicb.2019.01171
109. Ito, A., Oikawa, T.: Global mapping of terrestrial primary productivity and light-use efficiency
with a process-based model. In: Shiyomi, M., et al. (eds.), Global Environmental Change in
the Ocean and on Land, TERRAPUB, pp. 343–358 (2004)
110. Iwami, S., Holder, B.P., Beauchemin, C.A.A., et al.: Quantification system for the viral
dynamics of a highly pathogenic simian/human immunodeficiency virus based on an in vitro
experiment and a mathematical model. Retrovirology 9, 18 (2012). https://doi.org/10.1186/
1742-4690-9-18
111. Jackson, W.T., Coyne, C.B. (eds.): Enteroviruses: Omics, Molecular Biology, and Control
(2018). Caister Academic Press. https://doi.org/10.21775/9781910190739
112. Jackson, R.B., Mooney, H.A., Schulze, E.-D.: A global budget for fine root biomass, surface
area, and nutrient contents. Proc. Natl. Acad. Sci. USA 94, 7362–7366 (1997). www.pnas.org
113. Jacoby, R., Peukert, M., Succurro, A., Koprivova, A., Kopriva, S.: The role of soil microorganisms in plant mineral nutrition—current knowledge and future directions. Front Plant. Sci.
8, 1617 (2017). https://doi.org/10.3389/fpls.2017.01617
114. Jan, P., Calabrese, C., Lips, M.: Determinants of nitrogen surplus at farm level in Swiss
agriculture. Nutr. Cycl. Agroecosyst. 109, 133–148 (2017). https://doi.org/10.1007/s10705017-9871-9
51
96. Hayes, S., Mahony, J., Nauta, A., Van Sinderen, D.: Metagenomic approaches to assess bacteriophages in various environmental niches. Viruses 9, E127 (2017). https://doi.org/10.3390/
v9060127
97. Hellweger, F.L.: Carrying photosynthesis genes increases ecological fitness of cyanophage in
silico. Environ. Microbiol. 11, 1386–1394 (2009). https://doi.org/10.1111/j.1462-2920.2009.
01866.x. Epub 2009 Jan 23
98. Herzog, S., Wemheuer, F., Wemheuer, B., Daniel, R.: Effects of fertilization and sampling time
on composition and diversity of entire and active bacterial communities in German grassland
soils. PLoS ONE 10, e0145575 (2015). https://doi.org/10.1371/journal.pone.0145575
99. Hillesland, K.L., Stahl, D.A., Harcombe, W.: Measuring the cost of microbial mutualism.
Microbe 6, 427–434 (2011)
100. Hirmas, D.R., Gimenez, D., Nemes, A., et al.: Climate—induced changes in continental—
scale soil macroporosity may intensify water cycle. Nature 651, 100–103 (2018). https://doi.
org/10.1038/s41596.018.0463.x
101. Hobbie, J.E., Hobbie, E.A.: Microbes in nature are limited by carbon and energy: the starvingsurvival lifestyle in soil and consequences for estimating microbial rates. Front. Microbiol.
(2013). https://doi.org/10.3389/fmicb.2013.00324
102. Howard-Varona, C., Hargreaves, K.R., Abedon, S.T., Sullivan, M.B.: Lysogeny in nature:
mechanisms, impact and ecology of temperate phages. ISME J. 11, 1511–1520 (2017). https://
doi.org/10.1038/ismej.2017.16
103. Hu, Z., Wessels, H.J.C.T., van Alen, T., Jetten, M.S.M., Kartal, B.: Nitric oxide-dependent
anaerobic ammonium oxidation. Nat. Commum. 10, 1244 (2019). https://doi.org/10.1038/s41
467-019-09268-w
104. Hug, L.A., Baker, B.J., Anantharaman, K., Brown, C.T., Probst, A.J., Castelle, C.J., Butterfield, C.N., Hernsdorf, A., Amano, Y., Ise, K., Suzuki, Y., Dudek, N., Relman Finstad, K.M.,
Amundson, R., Thomas, B.C., Banfield, J.F.: A new view of the tree of life. Nat. Microbiol.
1, 16048 (2016). https://doi.org/10.1038/nmicrobiol.2016.48
105. Humphrey, P.T., Nguyen, T.T., Villalobos, M.M., Whiteman, N.K.: Diversity and abundance
of phyllosphere bacteria are linked to insect herbivory. Mol. Ecol. 23, 1497–1515 (2014).
https://doi.org/10.1111/mec.12657
106. Humphreys, I.R., Sebastian, S.: Novel viral vectors in infectious diseases. Immunology 153,
1–9 (2018). https://doi.org/10.1111/imm.12829
107. Hyman, P., Abedon, S.T. (eds.): Viruses of Microorganisms. Caister Academic Press (2018).
https://doi.org/10.21775/9781910190852
108. Igler, C., Abedon, S.T.: Commentary: a host-produced quorum-sensing autoinducer controls
a phage lysis-lysogeny decision. Front. Microbiol. 10, 1171 (2019). https://doi.org/10.3389/
fmicb.2019.01171
109. Ito, A., Oikawa, T.: Global mapping of terrestrial primary productivity and light-use efficiency
with a process-based model. In: Shiyomi, M., et al. (eds.), Global Environmental Change in
the Ocean and on Land, TERRAPUB, pp. 343–358 (2004)
110. Iwami, S., Holder, B.P., Beauchemin, C.A.A., et al.: Quantification system for the viral
dynamics of a highly pathogenic simian/human immunodeficiency virus based on an in vitro
experiment and a mathematical model. Retrovirology 9, 18 (2012). https://doi.org/10.1186/
1742-4690-9-18
111. Jackson, W.T., Coyne, C.B. (eds.): Enteroviruses: Omics, Molecular Biology, and Control
(2018). Caister Academic Press. https://doi.org/10.21775/9781910190739
112. Jackson, R.B., Mooney, H.A., Schulze, E.-D.: A global budget for fine root biomass, surface
area, and nutrient contents. Proc. Natl. Acad. Sci. USA 94, 7362–7366 (1997). www.pnas.org
113. Jacoby, R., Peukert, M., Succurro, A., Koprivova, A., Kopriva, S.: The role of soil microorganisms in plant mineral nutrition—current knowledge and future directions. Front Plant. Sci.
8, 1617 (2017). https://doi.org/10.3389/fpls.2017.01617
114. Jan, P., Calabrese, C., Lips, M.: Determinants of nitrogen surplus at farm level in Swiss
agriculture. Nutr. Cycl. Agroecosyst. 109, 133–148 (2017). https://doi.org/10.1007/s10705017-9871-9