Hettiarachchi, S. A., Kwon, Y. K., Lee, Y., Jo, E., Eom, T. Y., Kang,
Y. H., et al. (2019). Characterization of an acetyl xylan esterase
from the marine bacterium Ochrovirga pacifica and its synergism
with xylanase on beechwood xylan. Microbial Cell Factories.
https://doi.org/10.1186/s12934-019-1169-y.
Himmel, M. E., Ding, S. Y., Johnson, D. K., Adney, W. S., Nimlos, M.
R., Brady, J. W., Foust, T. D. (2007). Biomass recalcitrance:
Engineering plants and enzymes for biofuels production. Science
(80).
Hou, X. (2012). Anaerobic xylose fermentation by Spathaspora
passalidarum. Applied Microbiology and Biotechnology. https://
doi.org/10.1007/s00253-011-3694-4.
Houston, K., Tucker, M. R., Chowdhury, J., Shirley, N., & Little, A.
(2016). The plant cell wall: A complex and dynamic structure as
revealed by the responses of genes under stress conditions.
Frontiers in Plant Science.
Hoydonckx, H. E., Van Rhijn, W. M., Van Rhijn, W., De Vos, D. E., &
Jacobs, P. A. (2007). Furfural and derivatives. In Ullmann’s
encyclopedia of industrial chemistry.
Jacobsen, S. E., & Wyman, C. E. (2002). Xylose monomer and oligomer
yields for uncatalyzed hydrolysis of sugarcane bagasse hemicellulose at varying solids concentration. Industrial and Engineering
Chemistry Research. https://doi.org/10.1021/ie001025+.
Jeffries, T. W. (1983). Utilization of xylose by bacteria, yeasts, and
fungi. Advances in Biochemical Engineering/Biotechnology.
Jeffries, T. W., Fady, J. H., & Lightfoot, E. N. (1985). Effect of glucose
supplements on the fermentation of xylose by Pachysolen
tannophilus. Biotechnology and Bioengineering. https://doi.org/10.
1002/bit.260270211.
Jeon, W. Y., Yoon, B. H., Ko, B. S., Shim, W. Y., & Kim, J. H. (2012).
Xylitol production is increased by expression of codon-optimized
Neurospora crassa xylose reductase gene in Candida tropicalis.
Bioprocess and Biosystems Engineering.
Johansson, B., & Hahn-Hägerdal, B. (2002). The non-oxidative pentose
phosphate pathway controls the fermentation rate of xylulose but
not of xylose in Saccharomyces cerevisiae TMB3001. FEMS Yeast
Research. https://doi.org/10.1016/S1567-1356(02)00114-9.
Jönsson, L. J., Martín, C. (2016). Pretreatment of lignocellulose:
Formation of inhibitory by-products and strategies for minimizing
their effects. Bioresource Technology.
Kaewwichian, R., Khunnamwong, P., Am-In, S., Jindamorakot, S.,
Groenewald, M., & Limtong, S. (2019). Candida xylosifermentans
sp. Nov., a d-xylose-fermenting yeast species isolated in Thailand.
International Journal of Systematic and Evolutionary Microbiology, 69, 2674–2680. https://doi.org/10.1099/ijsem.0.003505.
Kim, D., & Woo, H. M. (2018). Deciphering bacterial xylose
metabolism and metabolic engineering of industrial microorganisms
for use as efficient microbial cell factories. Applied Microbiology
and Biotechnology.
Kim, J. H., Block, D. E., & Mills, D. A. (2010). Simultaneous
consumption of pentose and hexose sugars: An optimal microbial
phenotype for efficient fermentation of lignocellulosic biomass.
Applied Microbiology and Biotechnology.
Kim, M. J., Jang, M. U., Nam, G. H., Shin, H., Song, J. R., & Kim, T.
J. (2020). Functional expression and characterization of acetyl xylan
esterases CE family 7 from lactobacillus antri and bacillus
halodurans. Journal of Microbiology and Biotechnology. https://
doi.org/10.4014/jmb.2001.01004.
Ko, B. S., Kim, J., & Kim, J. H. (2006). Production of xylitol from
D-xylose by a xylitol dehydrogenase gene-disrupted mutant of
Candida tropicalis. Applied and Environment Microbiology. https://
doi.org/10.1128/AEM.02699-05.
Kötter, P., & Ciriacy, M. (1993). Xylose fermentation by Saccharomyces cerevisiae. Applied Microbiology and Biotechnology.
https://doi.org/10.1007/BF00167144.
Kucharska, K., Rybarczyk, P., Hołowacz, I., Łukajtis, R., Glinka, M.,
Kamiński, M. (2018). Pretreatment of lignocellulosic materials as
substrates for fermentation processes. Molecules.
Kumar, D., & Murthy, G. S. (2013). Stochastic molecular model of
enzymatic hydrolysis of cellulose for ethanol production. Biotechnology for Biofuels. https://doi.org/10.1186/1754-6834-6-63.
Kumar, P., Barrett, D. M., Delwiche, M. J., & Stroeve, P. (2009).
Methods for pretreatment of lignocellulosic biomass for efficient
hydrolysis and biofuel production. Industrial & Engineering
Chemistry Research.
Kuyper, M., Harhangi, H. R., Stave, A. K., Winkler, A. A., Jetten, M.
S. M., De Laat, W. T. A. M., et al. (2003). High-level functional
expression of a fungal xylose isomerase: The key to efficient
ethanolic fermentation of xylose by Saccharomyces cerevisiae?
FEMS Yeast Research. https://doi.org/10.1016/S1567-1356(03)
00141-7.
Kwak, S., & Jin, Y. S. (2017). Production of fuels and chemicals from
xylose by engineered Saccharomyces cerevisiae: A review and
perspective. Microbial Cell Factories.
Kwak, S., Jo, J. H., Yun, E. J., Jin, Y. S., & Seo, J. H. (2019).
Production of biofuels and chemicals from xylose using native and
engineered yeast strains. Biotechnology Advances, 37, 271–283.
https://doi.org/10.1016/j.biotechadv.2018.12.003.
Lachke, A. (2002). Biofuel from D-xylose—The second most abundant
sugar. Resonance. https://doi.org/10.1007/bf02836736.
Lau, M. W., & Dale, B. E. (2009). Cellulosic ethanol production from
AFEX-treated corn stover using Saccharomyces cerevisiae 424A
(LNH-ST). Proceedings of the National Academy of Sciences of the
United States of America. https://doi.org/10.1073/pnas.0812364106.
Lee, J., Xu, Y., & Huber, G. W. (2013). High-throughput screening of
monometallic catalysts for aqueous-phase hydrogenation of
biomass-derived oxygenates. Applied Catalysis B: Environmental.
https://doi.org/10.1016/j.apcatb.2013.03.031.
Lundqvist, J., Teleman, A., Junel, L., Zacchi, G., Dahlman, O.,
Tjerneld, F., et al. (2002). Lundqvist. Carbohydrate Polymers.
https://doi.org/10.1016/S0144-8617(01)00210-7.
Lynd, L. R., Weimer, P. J., Van Zyl, W. H., & Pretorius, I. S. (2002).
Microbial cellulose utilization: fundamentals and biotechnology.
Microbiology and Molecular Biology Reviews, 66, 506–577. https://
doi.org/10.1128/MMBR.66.3.506-577.2002.
Ma, T. Y., Lin, T. H., Hsu, T. C., Huang, C. F., Guo, G. L., & Hwang,
W. S. (2012). An improved method of xylose utilization by
recombinant Saccharomyces cerevisiae. Journal of Industrial
Microbiology and Biotechnology. https://doi.org/10.1007/s10295012-1153-6.
Machado, G., Leon, S., Santos, F., Lourega, R., Dullius, J., Mollmann,
M. E., et al. (2016). Literature review on furfural production from
lignocellulosic biomass. Natural Resources. https://doi.org/10.
4236/nr.2016.73012.
Maheshwari, R., Bharadwaj, G., & Bhat, M. K. (2000). Thermophilic
fungi: Their physiology and enzymes. Microbiology and Molecular
Biology Reviews. https://doi.org/10.1128/mmbr.64.3.461-488.2000.
Maitan-Alfenas, G. P., Visser, E. M., Guimarães, V. M. (2015).
Enzymatic hydrolysis of lignocellulosic biomass: Converting food
waste in valuable products. Current Opinion in Food Science.
Mäki-Arvela, P., Salmi, T., Holmbom, B., Willför, S., & Murzin, D. Y.
(2011). Synthesis of sugars by hydrolysis of hemicelluloses-A
review. Chemical Reviews.
Maleszka, R., & Schneider, H. (1982). Fermentation of D-xylose,
xylitol, and D-xylulose by yeasts. Canadian Journal of Microbiology. https://doi.org/10.1139/m82-054.
Maleszka, R., Wang, P. Y., & Schneider, H. (1982). Ethanol production
from d-galactose and glycerol by Pachysolen tannophilus. Enyzme
and Microbial Technology. https://doi.org/10.1016/0141-0229(82)
90059-X.
262
R. Rashid et al.
Y. H., et al. (2019). Characterization of an acetyl xylan esterase
from the marine bacterium Ochrovirga pacifica and its synergism
with xylanase on beechwood xylan. Microbial Cell Factories.
https://doi.org/10.1186/s12934-019-1169-y.
Himmel, M. E., Ding, S. Y., Johnson, D. K., Adney, W. S., Nimlos, M.
R., Brady, J. W., Foust, T. D. (2007). Biomass recalcitrance:
Engineering plants and enzymes for biofuels production. Science
(80).
Hou, X. (2012). Anaerobic xylose fermentation by Spathaspora
passalidarum. Applied Microbiology and Biotechnology. https://
doi.org/10.1007/s00253-011-3694-4.
Houston, K., Tucker, M. R., Chowdhury, J., Shirley, N., & Little, A.
(2016). The plant cell wall: A complex and dynamic structure as
revealed by the responses of genes under stress conditions.
Frontiers in Plant Science.
Hoydonckx, H. E., Van Rhijn, W. M., Van Rhijn, W., De Vos, D. E., &
Jacobs, P. A. (2007). Furfural and derivatives. In Ullmann’s
encyclopedia of industrial chemistry.
Jacobsen, S. E., & Wyman, C. E. (2002). Xylose monomer and oligomer
yields for uncatalyzed hydrolysis of sugarcane bagasse hemicellulose at varying solids concentration. Industrial and Engineering
Chemistry Research. https://doi.org/10.1021/ie001025+.
Jeffries, T. W. (1983). Utilization of xylose by bacteria, yeasts, and
fungi. Advances in Biochemical Engineering/Biotechnology.
Jeffries, T. W., Fady, J. H., & Lightfoot, E. N. (1985). Effect of glucose
supplements on the fermentation of xylose by Pachysolen
tannophilus. Biotechnology and Bioengineering. https://doi.org/10.
1002/bit.260270211.
Jeon, W. Y., Yoon, B. H., Ko, B. S., Shim, W. Y., & Kim, J. H. (2012).
Xylitol production is increased by expression of codon-optimized
Neurospora crassa xylose reductase gene in Candida tropicalis.
Bioprocess and Biosystems Engineering.
Johansson, B., & Hahn-Hägerdal, B. (2002). The non-oxidative pentose
phosphate pathway controls the fermentation rate of xylulose but
not of xylose in Saccharomyces cerevisiae TMB3001. FEMS Yeast
Research. https://doi.org/10.1016/S1567-1356(02)00114-9.
Jönsson, L. J., Martín, C. (2016). Pretreatment of lignocellulose:
Formation of inhibitory by-products and strategies for minimizing
their effects. Bioresource Technology.
Kaewwichian, R., Khunnamwong, P., Am-In, S., Jindamorakot, S.,
Groenewald, M., & Limtong, S. (2019). Candida xylosifermentans
sp. Nov., a d-xylose-fermenting yeast species isolated in Thailand.
International Journal of Systematic and Evolutionary Microbiology, 69, 2674–2680. https://doi.org/10.1099/ijsem.0.003505.
Kim, D., & Woo, H. M. (2018). Deciphering bacterial xylose
metabolism and metabolic engineering of industrial microorganisms
for use as efficient microbial cell factories. Applied Microbiology
and Biotechnology.
Kim, J. H., Block, D. E., & Mills, D. A. (2010). Simultaneous
consumption of pentose and hexose sugars: An optimal microbial
phenotype for efficient fermentation of lignocellulosic biomass.
Applied Microbiology and Biotechnology.
Kim, M. J., Jang, M. U., Nam, G. H., Shin, H., Song, J. R., & Kim, T.
J. (2020). Functional expression and characterization of acetyl xylan
esterases CE family 7 from lactobacillus antri and bacillus
halodurans. Journal of Microbiology and Biotechnology. https://
doi.org/10.4014/jmb.2001.01004.
Ko, B. S., Kim, J., & Kim, J. H. (2006). Production of xylitol from
D-xylose by a xylitol dehydrogenase gene-disrupted mutant of
Candida tropicalis. Applied and Environment Microbiology. https://
doi.org/10.1128/AEM.02699-05.
Kötter, P., & Ciriacy, M. (1993). Xylose fermentation by Saccharomyces cerevisiae. Applied Microbiology and Biotechnology.
https://doi.org/10.1007/BF00167144.
Kucharska, K., Rybarczyk, P., Hołowacz, I., Łukajtis, R., Glinka, M.,
Kamiński, M. (2018). Pretreatment of lignocellulosic materials as
substrates for fermentation processes. Molecules.
Kumar, D., & Murthy, G. S. (2013). Stochastic molecular model of
enzymatic hydrolysis of cellulose for ethanol production. Biotechnology for Biofuels. https://doi.org/10.1186/1754-6834-6-63.
Kumar, P., Barrett, D. M., Delwiche, M. J., & Stroeve, P. (2009).
Methods for pretreatment of lignocellulosic biomass for efficient
hydrolysis and biofuel production. Industrial & Engineering
Chemistry Research.
Kuyper, M., Harhangi, H. R., Stave, A. K., Winkler, A. A., Jetten, M.
S. M., De Laat, W. T. A. M., et al. (2003). High-level functional
expression of a fungal xylose isomerase: The key to efficient
ethanolic fermentation of xylose by Saccharomyces cerevisiae?
FEMS Yeast Research. https://doi.org/10.1016/S1567-1356(03)
00141-7.
Kwak, S., & Jin, Y. S. (2017). Production of fuels and chemicals from
xylose by engineered Saccharomyces cerevisiae: A review and
perspective. Microbial Cell Factories.
Kwak, S., Jo, J. H., Yun, E. J., Jin, Y. S., & Seo, J. H. (2019).
Production of biofuels and chemicals from xylose using native and
engineered yeast strains. Biotechnology Advances, 37, 271–283.
https://doi.org/10.1016/j.biotechadv.2018.12.003.
Lachke, A. (2002). Biofuel from D-xylose—The second most abundant
sugar. Resonance. https://doi.org/10.1007/bf02836736.
Lau, M. W., & Dale, B. E. (2009). Cellulosic ethanol production from
AFEX-treated corn stover using Saccharomyces cerevisiae 424A
(LNH-ST). Proceedings of the National Academy of Sciences of the
United States of America. https://doi.org/10.1073/pnas.0812364106.
Lee, J., Xu, Y., & Huber, G. W. (2013). High-throughput screening of
monometallic catalysts for aqueous-phase hydrogenation of
biomass-derived oxygenates. Applied Catalysis B: Environmental.
https://doi.org/10.1016/j.apcatb.2013.03.031.
Lundqvist, J., Teleman, A., Junel, L., Zacchi, G., Dahlman, O.,
Tjerneld, F., et al. (2002). Lundqvist. Carbohydrate Polymers.
https://doi.org/10.1016/S0144-8617(01)00210-7.
Lynd, L. R., Weimer, P. J., Van Zyl, W. H., & Pretorius, I. S. (2002).
Microbial cellulose utilization: fundamentals and biotechnology.
Microbiology and Molecular Biology Reviews, 66, 506–577. https://
doi.org/10.1128/MMBR.66.3.506-577.2002.
Ma, T. Y., Lin, T. H., Hsu, T. C., Huang, C. F., Guo, G. L., & Hwang,
W. S. (2012). An improved method of xylose utilization by
recombinant Saccharomyces cerevisiae. Journal of Industrial
Microbiology and Biotechnology. https://doi.org/10.1007/s10295012-1153-6.
Machado, G., Leon, S., Santos, F., Lourega, R., Dullius, J., Mollmann,
M. E., et al. (2016). Literature review on furfural production from
lignocellulosic biomass. Natural Resources. https://doi.org/10.
4236/nr.2016.73012.
Maheshwari, R., Bharadwaj, G., & Bhat, M. K. (2000). Thermophilic
fungi: Their physiology and enzymes. Microbiology and Molecular
Biology Reviews. https://doi.org/10.1128/mmbr.64.3.461-488.2000.
Maitan-Alfenas, G. P., Visser, E. M., Guimarães, V. M. (2015).
Enzymatic hydrolysis of lignocellulosic biomass: Converting food
waste in valuable products. Current Opinion in Food Science.
Mäki-Arvela, P., Salmi, T., Holmbom, B., Willför, S., & Murzin, D. Y.
(2011). Synthesis of sugars by hydrolysis of hemicelluloses-A
review. Chemical Reviews.
Maleszka, R., & Schneider, H. (1982). Fermentation of D-xylose,
xylitol, and D-xylulose by yeasts. Canadian Journal of Microbiology. https://doi.org/10.1139/m82-054.
Maleszka, R., Wang, P. Y., & Schneider, H. (1982). Ethanol production
from d-galactose and glycerol by Pachysolen tannophilus. Enyzme
and Microbial Technology. https://doi.org/10.1016/0141-0229(82)
90059-X.
262
R. Rashid et al.