Arnot JA, Gobas F (2006) A review of bioconcentration factor (BCF) and bioaccumulation factor
(BAF) assessments for organic chemicals in aquatic organisms. Environ Rev 14:257–297.
https://doi.org/10.1139/a06-005
Augustin T, Schlosser D, Baumbach R et al (2006) Biotransformation of 1-naphthol by a strictly
aquatic fungus. Curr Microbiol 52:216–220. https://doi.org/10.1007/s00284-005-0239-z
Avery SV, Tobin JM (1993) Mechanism of adsorption of hard and soft metal ions to Saccharomyces cerevisiae and influence of hard and soft anions. Appl Env Microbiol 59:2851–2856
Avery SV, Codd GA, Gadd GM (1993) Transport kinetics, cation inhibition and intracellular
location of accumulated caesium in the green microalga Chlorella salina. Microbiology
139:827–834. https://doi.org/10.1099/00221287-139-4-827
Barkay T, Schaefer J (2001) Metal and radionuclide bioremediation: issues, considerations and
potentials. Curr Opin Microbiol 4:318–323. https://doi.org/10.1016/s1369-5274(00)00210-1
Barral-Fraga L, Morin S, Rovira MDM et al (2016) Short-term arsenic exposure reduces diatom cell
size in biofilm communities. Environ Sci Pollut Res 23:4257–4270. https://doi.org/10.1007/
s11356-015-4894-8
Battin TJ, Kaplan LA, Newbold JD, Hansen CME (2003) Contributions of microbial biofilms
to ecosystem processes in stream mesocosms. Nature 426:439–442. https://doi.org/10.1038/
nature02152
Battin TJ, Besemer K, Bengtsson MM et al (2016) The ecology and biogeochemistry of stream
biofilms. Nat Rev Microbiol 14:251–263. https://doi.org/10.1038/nrmicro.2016.15
Behrens S, Kappler A, Obst M (2012) Linking environmental processes to the in situ functioning of
microorganisms by high-resolution secondary ion mass spectrometry (NanoSIMS) and scanning
transmission X-ray microscopy (STXM). Environ Microbiol 14:2851–2869. https://doi.org/10.
1111/j.1462-2920.2012.02724.x
Berglund O (2003) Periphyton density influences organochlorine accumulation in rivers. Limnol
Oceanogr 48:2106–2116
Berglund O, Nyström P, Larsson P (2005) Persistent organic pollutants in river food webs:
influence of trophic position and degree of heterotrophy. Can J Fish Aquat Sci 62:2021–2032.
https://doi.org/10.1139/f05-115
Bertini G (2016) Memory effect of aquatic biofilms in the partitioning of polycyclic aromatic
hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) in water streams. Int J Environ Sci
Dev 7:921–927. https://doi.org/10.18178/ijesd.2016.7.12.905
Bradac P, Behra R, Sigg L (2009) Accumulation of cadmium in periphyton under various
freshwater speciation conditions. Environ Sci Technol 43:7291–7296. https://doi.org/10.1021/
es9013536
Bradac P, Wagner B, Kistler D et al (2010) Cadmium speciation and accumulation in periphyton in
a small stream with dynamic concentration variations. Environ Pollut 158:641–648. https://doi.
org/10.1016/j.envpol.2009.10.031
Brown DA, Beveridge TJ, Keevil CW, Sheriff BL (1998) Evaluation of microscopic techniques to
observe iron precipitation in a natural microbial biofilm. FEMS Microbiol Ecol 26:297–310.
https://doi.org/10.1111/j.1574-6941.1998.tb00514.x
Burns A (1997) The role of disturbance in the ecology of biofilms in the River Murray, South
Australia. PhD thesis, University of Adelaide
Burns A, Ryder DS (2001) Potential for biofilms as biological indicators in Australian riverine
systems. Ecol Manag Restor 2:53–64. https://doi.org/10.1046/j.1442-8903.2001.00069.x
Carles L, Rossi F, Joly M et al (2017) Biotransformation of herbicides by aquatic microbial
communities associated to submerged leaves. Environ Sci Pollut Res 24:3664–3674. https://
doi.org/10.1007/s11356-016-8035-9
Carles L, Rossi F, Besse-Hoggan P et al (2018) Nicosulfuron degradation by an Ascomycete fungus
isolated from submerged Alnus leaf litter. Front Microbiol 9:3167. https://doi.org/10.3389/
fmicb.2018.03167
Carles L, Gardon H, Joseph L et al (2019) Meta-analysis of glyphosate contamination in surface
waters and dissipation by biofilms. Environ Int 124:284–293. https://doi.org/10.1016/j.envint.
2018.12.064
144
C. Bonnineau et al.
(BAF) assessments for organic chemicals in aquatic organisms. Environ Rev 14:257–297.
https://doi.org/10.1139/a06-005
Augustin T, Schlosser D, Baumbach R et al (2006) Biotransformation of 1-naphthol by a strictly
aquatic fungus. Curr Microbiol 52:216–220. https://doi.org/10.1007/s00284-005-0239-z
Avery SV, Tobin JM (1993) Mechanism of adsorption of hard and soft metal ions to Saccharomyces cerevisiae and influence of hard and soft anions. Appl Env Microbiol 59:2851–2856
Avery SV, Codd GA, Gadd GM (1993) Transport kinetics, cation inhibition and intracellular
location of accumulated caesium in the green microalga Chlorella salina. Microbiology
139:827–834. https://doi.org/10.1099/00221287-139-4-827
Barkay T, Schaefer J (2001) Metal and radionuclide bioremediation: issues, considerations and
potentials. Curr Opin Microbiol 4:318–323. https://doi.org/10.1016/s1369-5274(00)00210-1
Barral-Fraga L, Morin S, Rovira MDM et al (2016) Short-term arsenic exposure reduces diatom cell
size in biofilm communities. Environ Sci Pollut Res 23:4257–4270. https://doi.org/10.1007/
s11356-015-4894-8
Battin TJ, Kaplan LA, Newbold JD, Hansen CME (2003) Contributions of microbial biofilms
to ecosystem processes in stream mesocosms. Nature 426:439–442. https://doi.org/10.1038/
nature02152
Battin TJ, Besemer K, Bengtsson MM et al (2016) The ecology and biogeochemistry of stream
biofilms. Nat Rev Microbiol 14:251–263. https://doi.org/10.1038/nrmicro.2016.15
Behrens S, Kappler A, Obst M (2012) Linking environmental processes to the in situ functioning of
microorganisms by high-resolution secondary ion mass spectrometry (NanoSIMS) and scanning
transmission X-ray microscopy (STXM). Environ Microbiol 14:2851–2869. https://doi.org/10.
1111/j.1462-2920.2012.02724.x
Berglund O (2003) Periphyton density influences organochlorine accumulation in rivers. Limnol
Oceanogr 48:2106–2116
Berglund O, Nyström P, Larsson P (2005) Persistent organic pollutants in river food webs:
influence of trophic position and degree of heterotrophy. Can J Fish Aquat Sci 62:2021–2032.
https://doi.org/10.1139/f05-115
Bertini G (2016) Memory effect of aquatic biofilms in the partitioning of polycyclic aromatic
hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) in water streams. Int J Environ Sci
Dev 7:921–927. https://doi.org/10.18178/ijesd.2016.7.12.905
Bradac P, Behra R, Sigg L (2009) Accumulation of cadmium in periphyton under various
freshwater speciation conditions. Environ Sci Technol 43:7291–7296. https://doi.org/10.1021/
es9013536
Bradac P, Wagner B, Kistler D et al (2010) Cadmium speciation and accumulation in periphyton in
a small stream with dynamic concentration variations. Environ Pollut 158:641–648. https://doi.
org/10.1016/j.envpol.2009.10.031
Brown DA, Beveridge TJ, Keevil CW, Sheriff BL (1998) Evaluation of microscopic techniques to
observe iron precipitation in a natural microbial biofilm. FEMS Microbiol Ecol 26:297–310.
https://doi.org/10.1111/j.1574-6941.1998.tb00514.x
Burns A (1997) The role of disturbance in the ecology of biofilms in the River Murray, South
Australia. PhD thesis, University of Adelaide
Burns A, Ryder DS (2001) Potential for biofilms as biological indicators in Australian riverine
systems. Ecol Manag Restor 2:53–64. https://doi.org/10.1046/j.1442-8903.2001.00069.x
Carles L, Rossi F, Joly M et al (2017) Biotransformation of herbicides by aquatic microbial
communities associated to submerged leaves. Environ Sci Pollut Res 24:3664–3674. https://
doi.org/10.1007/s11356-016-8035-9
Carles L, Rossi F, Besse-Hoggan P et al (2018) Nicosulfuron degradation by an Ascomycete fungus
isolated from submerged Alnus leaf litter. Front Microbiol 9:3167. https://doi.org/10.3389/
fmicb.2018.03167
Carles L, Gardon H, Joseph L et al (2019) Meta-analysis of glyphosate contamination in surface
waters and dissipation by biofilms. Environ Int 124:284–293. https://doi.org/10.1016/j.envint.
2018.12.064
144
C. Bonnineau et al.