528
Harrigan JA, Vezina CM, McGarrigle BP, Ersing N, Box HC, Maccubbin AE, Olson JR (2004)
DNA adduct formation in precision-cut rat liver and lung slices exposed to benzo[a]pyrene.
Toxicol Sci 77(2):307–314. https://doi.org/10.1093/toxsci/kfh030
Heard E, Martienssen RA (2014) Transgenerational epigenetic inheritance: myths and mechanisms. Cell 157(1):95–109. https://doi.org/10.1016/j.cell.2014.02.045
Hilscherova K, Machala M, Kannan K, Blankenship AL, Giesy JP (2000) Cell bioassays for detection of aryl hydrocarbon (AhR) and estrogen receptor (ER) mediated activity in environmental
samples. Environ Sci Pollut Res 7(3):159–171. https://doi.org/10.1065/espr2000.02.017
Husseneder C, Donaldson JR, Foil LD (2016) Impact of the 2010 Deepwater Horizon oil spill on
population size and genetic structure of horse flies in Louisiana marshes. Sci Rep 6:18968.
https://doi.org/10.1038/srep18968
Incardona JP (2017) Molecular mechanisms of crude oil developmental toxicity in fish. Arch
Environ Contam Toxicol 73(1):19–32
International Chicken Genome Sequencing Consortium (2004) Sequence and comparative analysis
of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695.
https://doi.org/10.1038/nature03154
Jiang L, Zhang J, Wang J-J, Wang L, Zhang L, Li G, Yang X, Ma X, Sun X, Cai J, Zhang J, Huang
X, Yu M, Wang X, Liu F, Wu C-I, He C, Zhang B, Ci W, Liu J (2013) Sperm, but not oocyte,
DNA methylome is inherited by Zebrafish early embryos. Cell 153(4):773–784. https://doi.
org/10.1016/j.cell.2013.04.041
Kanherkar RR, Bhatia-Dey N, Csoka AB (2014) Epigenetics across the human lifespan. Front Cell
Dev Biol 2:49. https://doi.org/10.3389/fcell.2014.00049
Klekowski EJ, Corredor JE, Morell JM, Del Castillo CA (1994) Petroleum pollution and mutation
in mangroves. Mar Pollut Bull 28(3):166–169. https://doi.org/10.1016/0025-326X(94)90393-X
Knecht AL, Truong L, Marvel SW, Reif DM, Garcia A, Lu C, Simonich MT, Teeguarden JG,
Tanguay RL (2017) Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo[a]pyrene in zebrafish. Toxicol Appl Pharmacol
329:148–157. https://doi.org/10.1016/j.taap.2017.05.033
Kurdyukov S, Bullock M (2016) DNA methylation analysis: choosing the right method. Biology
(Basel) 5(1). https://doi.org/10.3390/biology5010003
Labbé C, Robles V, Herraez MP (2017) Epigenetics in fish gametes and early embryo. Aquaculture
472:93–106. https://doi.org/10.1016/j.aquaculture.2016.07.026
Lanham KA, Plavicki J, Peterson RE, Heideman W (2014) Cardiac myocyte-specific AHR activation phenocopies TCDD-induced toxicity in zebrafish. Toxicol Sci 141(1):141–154
Lee CE, Remfert JL, Opgenorth T, Lee KM, Stanford E, Connolly JW, Kim J, Tomke S (2017)
Evolutionary responses to crude oil from the Deepwater Horizon oil spill by the copepod
Eurytemora affinis. Evol Appl 10(8):813–828. https://doi.org/10.1111/eva.12502
Li B, Dewey CN (2011) RSEM: accurate transcript quantification from RNA-Seq data
with or without a reference genome. BMC Bioinformatics 12(1):323. https://doi.
org/10.1186/1471-2105-12-323
Li L, Zhang T, Qin X-S, Ge W, Ma H-G, Sun L-L, Hou Z-M, Chen H, Chen P, Qin G-Q, Shen W,
Zhang X-F (2014) Exposure to diethylhexyl phthalate (DEHP) results in a heritable modification of imprint genes DNA methylation in mouse oocytes. Mol Biol Rep 41(3):1227–1235.
https://doi.org/10.1007/s11033-013-2967-7
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang
JL, Kulbokas Iii EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting
CP, Galibert F, Smith DR, deJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J,
Chin C-W, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber
M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli K-P, Parker HG, Pollinger
JP, Searle SMJ, Sutter NB, Thomas R, Webber C, Baldwin J, Abebe A, Abouelleil A, Aftuck
L, Ait-zahra M, Aldredge T, Allen N, An P, Anderson S, Antoine C, Arachchi H, Aslam A,
Ayotte L, Bachantsang P, Barry A, Bayul T, Benamara M, Berlin A, Bessette D, Blitshteyn
B, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Brown A, Cahill P, Calixte
D. S. Portnoy et al.
Harrigan JA, Vezina CM, McGarrigle BP, Ersing N, Box HC, Maccubbin AE, Olson JR (2004)
DNA adduct formation in precision-cut rat liver and lung slices exposed to benzo[a]pyrene.
Toxicol Sci 77(2):307–314. https://doi.org/10.1093/toxsci/kfh030
Heard E, Martienssen RA (2014) Transgenerational epigenetic inheritance: myths and mechanisms. Cell 157(1):95–109. https://doi.org/10.1016/j.cell.2014.02.045
Hilscherova K, Machala M, Kannan K, Blankenship AL, Giesy JP (2000) Cell bioassays for detection of aryl hydrocarbon (AhR) and estrogen receptor (ER) mediated activity in environmental
samples. Environ Sci Pollut Res 7(3):159–171. https://doi.org/10.1065/espr2000.02.017
Husseneder C, Donaldson JR, Foil LD (2016) Impact of the 2010 Deepwater Horizon oil spill on
population size and genetic structure of horse flies in Louisiana marshes. Sci Rep 6:18968.
https://doi.org/10.1038/srep18968
Incardona JP (2017) Molecular mechanisms of crude oil developmental toxicity in fish. Arch
Environ Contam Toxicol 73(1):19–32
International Chicken Genome Sequencing Consortium (2004) Sequence and comparative analysis
of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695.
https://doi.org/10.1038/nature03154
Jiang L, Zhang J, Wang J-J, Wang L, Zhang L, Li G, Yang X, Ma X, Sun X, Cai J, Zhang J, Huang
X, Yu M, Wang X, Liu F, Wu C-I, He C, Zhang B, Ci W, Liu J (2013) Sperm, but not oocyte,
DNA methylome is inherited by Zebrafish early embryos. Cell 153(4):773–784. https://doi.
org/10.1016/j.cell.2013.04.041
Kanherkar RR, Bhatia-Dey N, Csoka AB (2014) Epigenetics across the human lifespan. Front Cell
Dev Biol 2:49. https://doi.org/10.3389/fcell.2014.00049
Klekowski EJ, Corredor JE, Morell JM, Del Castillo CA (1994) Petroleum pollution and mutation
in mangroves. Mar Pollut Bull 28(3):166–169. https://doi.org/10.1016/0025-326X(94)90393-X
Knecht AL, Truong L, Marvel SW, Reif DM, Garcia A, Lu C, Simonich MT, Teeguarden JG,
Tanguay RL (2017) Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo[a]pyrene in zebrafish. Toxicol Appl Pharmacol
329:148–157. https://doi.org/10.1016/j.taap.2017.05.033
Kurdyukov S, Bullock M (2016) DNA methylation analysis: choosing the right method. Biology
(Basel) 5(1). https://doi.org/10.3390/biology5010003
Labbé C, Robles V, Herraez MP (2017) Epigenetics in fish gametes and early embryo. Aquaculture
472:93–106. https://doi.org/10.1016/j.aquaculture.2016.07.026
Lanham KA, Plavicki J, Peterson RE, Heideman W (2014) Cardiac myocyte-specific AHR activation phenocopies TCDD-induced toxicity in zebrafish. Toxicol Sci 141(1):141–154
Lee CE, Remfert JL, Opgenorth T, Lee KM, Stanford E, Connolly JW, Kim J, Tomke S (2017)
Evolutionary responses to crude oil from the Deepwater Horizon oil spill by the copepod
Eurytemora affinis. Evol Appl 10(8):813–828. https://doi.org/10.1111/eva.12502
Li B, Dewey CN (2011) RSEM: accurate transcript quantification from RNA-Seq data
with or without a reference genome. BMC Bioinformatics 12(1):323. https://doi.
org/10.1186/1471-2105-12-323
Li L, Zhang T, Qin X-S, Ge W, Ma H-G, Sun L-L, Hou Z-M, Chen H, Chen P, Qin G-Q, Shen W,
Zhang X-F (2014) Exposure to diethylhexyl phthalate (DEHP) results in a heritable modification of imprint genes DNA methylation in mouse oocytes. Mol Biol Rep 41(3):1227–1235.
https://doi.org/10.1007/s11033-013-2967-7
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang
JL, Kulbokas Iii EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting
CP, Galibert F, Smith DR, deJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J,
Chin C-W, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber
M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli K-P, Parker HG, Pollinger
JP, Searle SMJ, Sutter NB, Thomas R, Webber C, Baldwin J, Abebe A, Abouelleil A, Aftuck
L, Ait-zahra M, Aldredge T, Allen N, An P, Anderson S, Antoine C, Arachchi H, Aslam A,
Ayotte L, Bachantsang P, Barry A, Bayul T, Benamara M, Berlin A, Bessette D, Blitshteyn
B, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Brown A, Cahill P, Calixte
D. S. Portnoy et al.