124
Shin B (2018) Hydrocarbon degradation under contrasting redox conditions in shallow coastal
sediments of the northern Gulf of Mexico, Ph.D. Dissertation, Georgia Institute of Technology,
pp 160
Shin B, Kim M, Zengler K, Chin KJ, Overholt WA, Gieg LM, Konstantinidis KT, Kostka JE
(2019) Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by
enriched consortia from northern Gulf of Mexico seafloor sediment. Sci Rep 9(1):1239
Sibert R, Harrison S, Joye SB (2017) Protocols for radiotracer estimation of primary hydrocarbon
oxidation in oxygenated seawater. In: McGenity TJ, Timmis KN, Nogales B (eds) Hydrocarbon
and lipid microbiology protocols: field studies. Springer, Berlin, Heidelberg, pp 263–276
Simonato F, Campanaro S, Lauro FM, Vezzi A, D’Angelo M, Vitulo N, Valle G, Bartlett DH (2006)
Piezophilic adaptation: a genomic point of view. J Biotechnol 126(1):11–25
Soni BK, Conrad J, Kelley R, Srivastava V (1998) Effect of temperature and pressure on growth
and methane utilization by several methanotrophic cultures. Appl Biochem Biotechnol
70–72(1):729–738
Tapilatu Y, Acquaviva M, Guigue C, Miralles G, Bertrand JC, Cuny P (2010a) Isolation of
alkane- degrading bacteria from deep-sea Mediterranean sediments. Lett Appl Microbiol
50(2):234–236
Tapilatu YH, Grossi V, Acquaviva M, Militon C, Bertrand J-C, Cuny P (2010b) Isolation of
hydrocarbon-degrading extremely halophilic archaea from an uncontaminated hypersaline pond (Camargue, France). Extremophiles 14(2):225–231. https://doi.org/10.1007/
s00792-010-0301-z
Timmers PHA, Gieteling J, Widjaja-Greefkes HCA, Plugge CM, Stams AJM, Lens PNL, Meulepas
RJW (2015) Growth of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a
high-pressure membrane capsule bioreactor. Appl Environ Microbiol 81(4):1286–1296
Valentine DL, Kessler JD, Redmond MC, Mendes SD, Heintz MB, Farwell C, Hu L, Kinnaman
FS, Yvon-Lewis S, Du M, Chan EW, Garcia Tigreros F, Villanueva CJ (2010) Propane respiration jump-starts microbial response to a deep oil spill. Science 330(6001):208–211. https://doi.
org/10.1126/science.1196830
Valentine DL, Mezić I, Maćešić S, Črnjarić-Žic N, Ivić S, Hogan PJ, Fonoberov VA, Loire S
(2012) Dynamic autoinoculation and the microbial ecology of a deep water hydrocarbon irruption. Proc Natl Acad Sci U S A 109:20286–20291
Valentine DL, Fisher GB, Bagby SC, Nelson RK, Reddy CM, Sylva SP, Woo MA (2014) Fallout
plume of submerged oil from Deepwater Horizon. Proc Natl Acad Sci 111(45):15906–15911.
https://doi.org/10.1073/pnas.1414873111
Valladares Juárez AG, Kadimesetty HS, Achatz DE, Schedler M, Muller R (2015) Online monitoring of crude oil biodegradation at elevated pressures. IEEE J Sel Top Appl Earth Obs Remote
Sens 8(2):872–878. https://doi.org/10.1109/JSTARS.2014.2347896
Xie Z, Jian H, Jin Z, Xiao X (2018) Enhancing the adaptability of the deep-sea bacterium
Shewanella piezotolerans WP3 to high pressure and low temperature by experimental evolution under H2O2 stress. Appl Environ Microbiol 84(5):e02342–e02317
Yang T, Nigro LM, Gutierrez T, D’Ambrosio L, Joye SB, Highsmith R, Teske A (2016) Pulsed
blooms and persistent oil-degrading bacterial populations in the water column during and after
the Deepwater Horizon blowout. Deep-Sea Res II Top Stud Oceanogr 129:282–291. https://
doi.org/10.1016/j.dsr2.2014.01.014
Yayanos AA (1995) Microbiology to 10,500 meters in the Deep Sea. Annu Rev Microbiol
49(1):777–805
Zhang Y, Henrie JP, Bursens J, Boon N (2010) Stimulation of in vitro anaerobic oxidation of
methane rate in a continuous high-pressure bioreactor. Bioresour Technol 101(9):3132–3138.
https://doi.org/10.1016/j.biortech.2009.11.103
ZoBell CE, Johnson FH (1949) The influence of hydrostatic pressure on the growth and viability
of terrestrial and marine bacteria. J Bacteriol 57(2):179
J. E. Kostka et al.
Shin B (2018) Hydrocarbon degradation under contrasting redox conditions in shallow coastal
sediments of the northern Gulf of Mexico, Ph.D. Dissertation, Georgia Institute of Technology,
pp 160
Shin B, Kim M, Zengler K, Chin KJ, Overholt WA, Gieg LM, Konstantinidis KT, Kostka JE
(2019) Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by
enriched consortia from northern Gulf of Mexico seafloor sediment. Sci Rep 9(1):1239
Sibert R, Harrison S, Joye SB (2017) Protocols for radiotracer estimation of primary hydrocarbon
oxidation in oxygenated seawater. In: McGenity TJ, Timmis KN, Nogales B (eds) Hydrocarbon
and lipid microbiology protocols: field studies. Springer, Berlin, Heidelberg, pp 263–276
Simonato F, Campanaro S, Lauro FM, Vezzi A, D’Angelo M, Vitulo N, Valle G, Bartlett DH (2006)
Piezophilic adaptation: a genomic point of view. J Biotechnol 126(1):11–25
Soni BK, Conrad J, Kelley R, Srivastava V (1998) Effect of temperature and pressure on growth
and methane utilization by several methanotrophic cultures. Appl Biochem Biotechnol
70–72(1):729–738
Tapilatu Y, Acquaviva M, Guigue C, Miralles G, Bertrand JC, Cuny P (2010a) Isolation of
alkane- degrading bacteria from deep-sea Mediterranean sediments. Lett Appl Microbiol
50(2):234–236
Tapilatu YH, Grossi V, Acquaviva M, Militon C, Bertrand J-C, Cuny P (2010b) Isolation of
hydrocarbon-degrading extremely halophilic archaea from an uncontaminated hypersaline pond (Camargue, France). Extremophiles 14(2):225–231. https://doi.org/10.1007/
s00792-010-0301-z
Timmers PHA, Gieteling J, Widjaja-Greefkes HCA, Plugge CM, Stams AJM, Lens PNL, Meulepas
RJW (2015) Growth of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a
high-pressure membrane capsule bioreactor. Appl Environ Microbiol 81(4):1286–1296
Valentine DL, Kessler JD, Redmond MC, Mendes SD, Heintz MB, Farwell C, Hu L, Kinnaman
FS, Yvon-Lewis S, Du M, Chan EW, Garcia Tigreros F, Villanueva CJ (2010) Propane respiration jump-starts microbial response to a deep oil spill. Science 330(6001):208–211. https://doi.
org/10.1126/science.1196830
Valentine DL, Mezić I, Maćešić S, Črnjarić-Žic N, Ivić S, Hogan PJ, Fonoberov VA, Loire S
(2012) Dynamic autoinoculation and the microbial ecology of a deep water hydrocarbon irruption. Proc Natl Acad Sci U S A 109:20286–20291
Valentine DL, Fisher GB, Bagby SC, Nelson RK, Reddy CM, Sylva SP, Woo MA (2014) Fallout
plume of submerged oil from Deepwater Horizon. Proc Natl Acad Sci 111(45):15906–15911.
https://doi.org/10.1073/pnas.1414873111
Valladares Juárez AG, Kadimesetty HS, Achatz DE, Schedler M, Muller R (2015) Online monitoring of crude oil biodegradation at elevated pressures. IEEE J Sel Top Appl Earth Obs Remote
Sens 8(2):872–878. https://doi.org/10.1109/JSTARS.2014.2347896
Xie Z, Jian H, Jin Z, Xiao X (2018) Enhancing the adaptability of the deep-sea bacterium
Shewanella piezotolerans WP3 to high pressure and low temperature by experimental evolution under H2O2 stress. Appl Environ Microbiol 84(5):e02342–e02317
Yang T, Nigro LM, Gutierrez T, D’Ambrosio L, Joye SB, Highsmith R, Teske A (2016) Pulsed
blooms and persistent oil-degrading bacterial populations in the water column during and after
the Deepwater Horizon blowout. Deep-Sea Res II Top Stud Oceanogr 129:282–291. https://
doi.org/10.1016/j.dsr2.2014.01.014
Yayanos AA (1995) Microbiology to 10,500 meters in the Deep Sea. Annu Rev Microbiol
49(1):777–805
Zhang Y, Henrie JP, Bursens J, Boon N (2010) Stimulation of in vitro anaerobic oxidation of
methane rate in a continuous high-pressure bioreactor. Bioresour Technol 101(9):3132–3138.
https://doi.org/10.1016/j.biortech.2009.11.103
ZoBell CE, Johnson FH (1949) The influence of hydrostatic pressure on the growth and viability
of terrestrial and marine bacteria. J Bacteriol 57(2):179
J. E. Kostka et al.