Fisher MC, Henk DA, Briggs CJ, Brownstein JS, Madoff LC, McCraw SL, Gurr SJ (2012)
Emerging fungal threats to animal, plant and ecosystem health. Nature 484:186–194
Forney LJ, Zhou X, Brown CJ (2004) Molecular microbial ecology: land of the one-eyed king. Curr
Opin Microbiol 7:210–220
Friboulet A, Thomas D (2005) Systems biology–an interdisciplinary approach. Biosens Bioelectron
20:2404–2407
Fries MR, Hopkins GD, McCarty PL, Forney LJ, Tiedje JM (1997) Microbial succession during a
field evaluation of phenol and toluene as the primary substrates for trichloroethene
co-metabolism. Appl Environ Microbiol 63:1515–2122
Fulekar M.H. (2008). Environmental Biotechnology. CRC Press Science publisher, Taylor and
Francis Group, Boca Raton, Florida, USA
Gao H, Wang Y, Liu X. (2004) Global transcriptome analysis of the heat shock response of
Shewanella oneidensis. J Bacteriol 186:7796–7803
Gao J, Ellis LB, Wackett LP (2010) The University of Minnesota Biocatalysis/Biodegradation
database: improving public access. Nucleic Acids Res 38:D488–D491
Geets J, Borremans B, Diels L, Springael D, Vangronsveld J, van der Lelie D (2006) DsrB genebased DGGE for community and diversity surveys of sulphate-reducing bacteria. J Microbiol
Methods 66:194–205
Gentry TJ, Wickham GS, Schadt CW, He Z, Zhou J (2006) Microarray applications in microbial
ecology research. Microb Ecol 52:159–175
Gich FB, Amer E, Figueras JB, Abella CA, Balaguer MD, Poch M (2000) Assessment of microbial
community structure changes by amplified ribosomal DNA restriction analysis (ARDRA). Int
Microbiol 3:103–106
Golyshin PN, Santos MD, Kaiser VAO (2003) Genome sequence completed of Alcanivorax
borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from
marine systems. J Biotechnol 106:215–220
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM (2007) DNA–
DNA hybridization values and their relationship to whole-genome sequence similarities. Int J
Syst Evol Microbiol 57:81–91
Gough HL, Stahl DA (2011) Microbial community structures in anoxic freshwater lake sediment
along a metal contamination gradient. ISME J 5:543–558
Graham RLJ, Graham C, McMullan G (2007) Microbial proteomics: a mass spectrometry primer
for biologists. Microb Cell Factories 6:26
Greene EA, Voordouw G (2003) Analysis of environmental microbial communities by reverse
sample genome probing. J Microbiol Methods 53:211–219
Greene EA, Kay JG, Jaber K, Stehmeier LG, Voordouw G (2000) Composition of soil microbial
communities enriched on a mixture of aromatic hydrocarbons. Appl Environ Microbiol
66:5282–5289
Griffiths BS, Ritz K, Ebblewhite N, Dobson G (1999) Soil microbial community structure: effects
of substrate loading rates. Soil Biol Biochem 31:145–153
Haack SK, Fogarty LR, West TJ, Alm EW, McGuire JT, Long DT (2004) Spatial and temporal
changes in microbial community structure associated with recharge-influenced chemical gradients in a contaminated aquifer. Environ Microbiol 6:438–448
Haro MA, De lorenzo V (2001) Metabolic engineering of bacteria for environmental applications:
construction of Pseudomonas strains for biodegradation of 2-chlorotoluene. J Biotechnol
85:103–113
Hendrickx B, Dejonghe W, Faber F, Boenne W, Bastiaens L, Verstraete W (2006) PCR DGGE
method to assess the diversity of BTEX mono-oxygenase genes at contaminated sites. FEMS
Microbiol Ecol 55:262–273
Hesham A, Khan S, Tao Y, Li D, Zhang Y, Yang M (2012) Biodegradation of high molecular
weight PAHs using isolated yeast mixtures: application of meta-genomic methods for community structure analyses. Environ Sci Pollut Res 19:3568–3578
468
S. K. Shekhar et al.
Emerging fungal threats to animal, plant and ecosystem health. Nature 484:186–194
Forney LJ, Zhou X, Brown CJ (2004) Molecular microbial ecology: land of the one-eyed king. Curr
Opin Microbiol 7:210–220
Friboulet A, Thomas D (2005) Systems biology–an interdisciplinary approach. Biosens Bioelectron
20:2404–2407
Fries MR, Hopkins GD, McCarty PL, Forney LJ, Tiedje JM (1997) Microbial succession during a
field evaluation of phenol and toluene as the primary substrates for trichloroethene
co-metabolism. Appl Environ Microbiol 63:1515–2122
Fulekar M.H. (2008). Environmental Biotechnology. CRC Press Science publisher, Taylor and
Francis Group, Boca Raton, Florida, USA
Gao H, Wang Y, Liu X. (2004) Global transcriptome analysis of the heat shock response of
Shewanella oneidensis. J Bacteriol 186:7796–7803
Gao J, Ellis LB, Wackett LP (2010) The University of Minnesota Biocatalysis/Biodegradation
database: improving public access. Nucleic Acids Res 38:D488–D491
Geets J, Borremans B, Diels L, Springael D, Vangronsveld J, van der Lelie D (2006) DsrB genebased DGGE for community and diversity surveys of sulphate-reducing bacteria. J Microbiol
Methods 66:194–205
Gentry TJ, Wickham GS, Schadt CW, He Z, Zhou J (2006) Microarray applications in microbial
ecology research. Microb Ecol 52:159–175
Gich FB, Amer E, Figueras JB, Abella CA, Balaguer MD, Poch M (2000) Assessment of microbial
community structure changes by amplified ribosomal DNA restriction analysis (ARDRA). Int
Microbiol 3:103–106
Golyshin PN, Santos MD, Kaiser VAO (2003) Genome sequence completed of Alcanivorax
borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from
marine systems. J Biotechnol 106:215–220
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM (2007) DNA–
DNA hybridization values and their relationship to whole-genome sequence similarities. Int J
Syst Evol Microbiol 57:81–91
Gough HL, Stahl DA (2011) Microbial community structures in anoxic freshwater lake sediment
along a metal contamination gradient. ISME J 5:543–558
Graham RLJ, Graham C, McMullan G (2007) Microbial proteomics: a mass spectrometry primer
for biologists. Microb Cell Factories 6:26
Greene EA, Voordouw G (2003) Analysis of environmental microbial communities by reverse
sample genome probing. J Microbiol Methods 53:211–219
Greene EA, Kay JG, Jaber K, Stehmeier LG, Voordouw G (2000) Composition of soil microbial
communities enriched on a mixture of aromatic hydrocarbons. Appl Environ Microbiol
66:5282–5289
Griffiths BS, Ritz K, Ebblewhite N, Dobson G (1999) Soil microbial community structure: effects
of substrate loading rates. Soil Biol Biochem 31:145–153
Haack SK, Fogarty LR, West TJ, Alm EW, McGuire JT, Long DT (2004) Spatial and temporal
changes in microbial community structure associated with recharge-influenced chemical gradients in a contaminated aquifer. Environ Microbiol 6:438–448
Haro MA, De lorenzo V (2001) Metabolic engineering of bacteria for environmental applications:
construction of Pseudomonas strains for biodegradation of 2-chlorotoluene. J Biotechnol
85:103–113
Hendrickx B, Dejonghe W, Faber F, Boenne W, Bastiaens L, Verstraete W (2006) PCR DGGE
method to assess the diversity of BTEX mono-oxygenase genes at contaminated sites. FEMS
Microbiol Ecol 55:262–273
Hesham A, Khan S, Tao Y, Li D, Zhang Y, Yang M (2012) Biodegradation of high molecular
weight PAHs using isolated yeast mixtures: application of meta-genomic methods for community structure analyses. Environ Sci Pollut Res 19:3568–3578
468
S. K. Shekhar et al.