78
Adesemoye AO, Kloepper JW (2009) Plant–microbes interactions in enhanced fertilizer-use
efficiency. Appl Microbiol Biotechnol 85:1–12
Aguiar-Pulido V, Huang W, Suarez-Ulloa V, Cickovski T, Mathee K, Narasimhan G (2016)
Metagenomics, metatranscriptomics, and metabolomics approaches for microbiome analysis:
supplementary issue: bioinformatics methods and applications for big metagenomics data.
Evol Bioinform 12:EBO-S36436
Akinsemolu AA (2018) The role of microorganisms in achieving the sustainable development
Goals. J Clean Prod 182:139–155
Albantoglu OU, Way SF, Hinrichs SH, Sayood K (2011) RAIphy: phylogenetic classification
of metagenomics samples using iterative refinement of relative abundance index profiles.
BMC Bioinform 12:41
Amann R, Fuchs BM (2008) Single-cell identification in microbial communities by improved
fluorescence in situ hybridization techniques. Nat Rev Microbiol 6:339–348
Amico SD, Collins T, Marx J-C, Feller G, Gerday C (2006) Psychrophilic microorganisms:
challenges for life. EMBO Rep 7:385–389
Anderson LB, Maderia M, Ouellette AJA, Putman-Evans C, Higgins L, Krick T, MacCoss MJ,
Lim H, Yates JR, Barry BA (2002) Post translational modifications in the CP43 subunit of
photosystem II. Proc Natl Acad Sci U S A 23:14676–14681
Andreolli M, Lampis S, Poli M, Gullner G, Biró B, Vallini G (2013) Endophytic Burkholderia
fungorum DBT1 can improve phytoremediation efficiency of polycyclic aromatic hydrocarbons. Chemosphere 92:688–694
Anupama NB, Jogaiah S, Ito S, Amruthesh KN, Tran LP (2015) Improvement of growth, fruit
weight and early blight disease protection of tomato plants by rhizosphere bacteria is correlated
with their beneficial traits and induced biosynthesis of antioxidant peroxidase and polyphenol
oxidase. Plant Sci 231:62–73
Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P (2010) Smash Community: a metagenomic annotation and analysis tool. Bioinformatics 26:2977–2978
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Meyer F et al (2008) The RAST
server: rapid annotations using subsystems technology. BMC Genomics 9(1):75. https://doi.
org/10.1186/1471-2164-9-75
Babu AG, Shim J, Shea PJ, Oh BT (2014a) Penicillium aculeatum PDR-4 and Trichoderma
sp. PDR-16 promote phytoremediation of mine tailing soil and bioenergy production with
sorghum- sudan grass. Ecol Eng 69:186–191
Babu AG, Shim J, Bang KS, Shea PJ, Oh BT (2014b) Trichoderma virens PDR-28: a heavy metaltolerant and plant growth-promoting fungus for remediation and bioenergy crop production on
mine tailing soil. J Environ Manag 132:129–134
Badri DV, Vivanco JM (2009) Regulation and function of root exudates. Plant Cell Environ
32:666–681
Bahadur A, Ahmad R, Afzal A, Feng H, Suthar V, Batool A, Mahmood-ul-Hassan M (2017) The
influences of Cr-tolerant rhizobacteria in phytoremediation and attenuation of Cr (VI) stress in
agronomic sunflower (Helianthus annuus L.). Chemosphere 179:112–119
Bai Y, Liang J, Liu R, Hu C, Qu J (2014) Metagenomic analysis reveals microbial diversity and
function in the rhizosphere soil of a constructed wetland. Environ Technol 35:2521–2527
Balseiro-Romero M, Gkorezis P, Kidd PS, Van Hamme J, Weyens N, Monterroso C, Vangronsveld
J (2017) Use of plant growth promoting bacterial strains to improve Cytisus striatus and
Lupinus luteus development for potential application in phytoremediation. Sci Total Environ
581:676–688
Banerjee S, Schlaeppi K, Heijden MG (2018) Keystone taxa as drivers of microbiome structure
and functioning. Nat Rev Microbiol. https://doi.org/10.1038/s41579-018-0024-1
Baraniya D, Puglisi E, Ceccherini MT, Pietramellara G, Giagnoni L, Arenella M, Renella G
(2016) Protease encoding microbial communities and protease activity of the rhizosphere
and bulk soils of two maize lines with different N uptake efficiency. Soil Biol Biochem
96:176–179
References
Adesemoye AO, Kloepper JW (2009) Plant–microbes interactions in enhanced fertilizer-use
efficiency. Appl Microbiol Biotechnol 85:1–12
Aguiar-Pulido V, Huang W, Suarez-Ulloa V, Cickovski T, Mathee K, Narasimhan G (2016)
Metagenomics, metatranscriptomics, and metabolomics approaches for microbiome analysis:
supplementary issue: bioinformatics methods and applications for big metagenomics data.
Evol Bioinform 12:EBO-S36436
Akinsemolu AA (2018) The role of microorganisms in achieving the sustainable development
Goals. J Clean Prod 182:139–155
Albantoglu OU, Way SF, Hinrichs SH, Sayood K (2011) RAIphy: phylogenetic classification
of metagenomics samples using iterative refinement of relative abundance index profiles.
BMC Bioinform 12:41
Amann R, Fuchs BM (2008) Single-cell identification in microbial communities by improved
fluorescence in situ hybridization techniques. Nat Rev Microbiol 6:339–348
Amico SD, Collins T, Marx J-C, Feller G, Gerday C (2006) Psychrophilic microorganisms:
challenges for life. EMBO Rep 7:385–389
Anderson LB, Maderia M, Ouellette AJA, Putman-Evans C, Higgins L, Krick T, MacCoss MJ,
Lim H, Yates JR, Barry BA (2002) Post translational modifications in the CP43 subunit of
photosystem II. Proc Natl Acad Sci U S A 23:14676–14681
Andreolli M, Lampis S, Poli M, Gullner G, Biró B, Vallini G (2013) Endophytic Burkholderia
fungorum DBT1 can improve phytoremediation efficiency of polycyclic aromatic hydrocarbons. Chemosphere 92:688–694
Anupama NB, Jogaiah S, Ito S, Amruthesh KN, Tran LP (2015) Improvement of growth, fruit
weight and early blight disease protection of tomato plants by rhizosphere bacteria is correlated
with their beneficial traits and induced biosynthesis of antioxidant peroxidase and polyphenol
oxidase. Plant Sci 231:62–73
Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P (2010) Smash Community: a metagenomic annotation and analysis tool. Bioinformatics 26:2977–2978
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Meyer F et al (2008) The RAST
server: rapid annotations using subsystems technology. BMC Genomics 9(1):75. https://doi.
org/10.1186/1471-2164-9-75
Babu AG, Shim J, Shea PJ, Oh BT (2014a) Penicillium aculeatum PDR-4 and Trichoderma
sp. PDR-16 promote phytoremediation of mine tailing soil and bioenergy production with
sorghum- sudan grass. Ecol Eng 69:186–191
Babu AG, Shim J, Bang KS, Shea PJ, Oh BT (2014b) Trichoderma virens PDR-28: a heavy metaltolerant and plant growth-promoting fungus for remediation and bioenergy crop production on
mine tailing soil. J Environ Manag 132:129–134
Badri DV, Vivanco JM (2009) Regulation and function of root exudates. Plant Cell Environ
32:666–681
Bahadur A, Ahmad R, Afzal A, Feng H, Suthar V, Batool A, Mahmood-ul-Hassan M (2017) The
influences of Cr-tolerant rhizobacteria in phytoremediation and attenuation of Cr (VI) stress in
agronomic sunflower (Helianthus annuus L.). Chemosphere 179:112–119
Bai Y, Liang J, Liu R, Hu C, Qu J (2014) Metagenomic analysis reveals microbial diversity and
function in the rhizosphere soil of a constructed wetland. Environ Technol 35:2521–2527
Balseiro-Romero M, Gkorezis P, Kidd PS, Van Hamme J, Weyens N, Monterroso C, Vangronsveld
J (2017) Use of plant growth promoting bacterial strains to improve Cytisus striatus and
Lupinus luteus development for potential application in phytoremediation. Sci Total Environ
581:676–688
Banerjee S, Schlaeppi K, Heijden MG (2018) Keystone taxa as drivers of microbiome structure
and functioning. Nat Rev Microbiol. https://doi.org/10.1038/s41579-018-0024-1
Baraniya D, Puglisi E, Ceccherini MT, Pietramellara G, Giagnoni L, Arenella M, Renella G
(2016) Protease encoding microbial communities and protease activity of the rhizosphere
and bulk soils of two maize lines with different N uptake efficiency. Soil Biol Biochem
96:176–179
References