101
© The Author(s), under exclusive license to Springer Nature Switzerland AG 2020
R. K. Dubey et al., Unravelling the Soil Microbiome, SpringerBriefs in
Environmental Science, https://doi.org/10.1007/978-3-030-15516-2
A
Agricultural crops, 13–14
AMPHORA2, 66
Arbuscular mycorrhizal fungi (AMF), 11
Automated version of RISA (Ribosomal
intergenic spacer analysis (ARISA)
BLAST, 28
PCR, 28
B
Bayes classification system, 67
Bioinformatics tools
FragGeneScan, 65
Genovo, 61
green genes, 66
khmer, 65
Meta-IDBA toolkit, 65
MetAMOS, 65
MetaORFA, 65
MetaVelvet, 65
MOCAT, 65
SOAPdenovo, 65
Bioremediation, 57
C
CAMERA, 70
Carbon sequestration, 17–19, 72
CARMA3, 66
CCREPE, 68
Chemical fertilizers, 2
Classifier for Metagenomic Sequences, 66
Community-level analysis, 44
D
Deferential gradient gel electrophoresis
(DGGE), 74
chemical-based denaturation, 27
cloning and sequencing, 26
fingerprinting techniques, 26
herbicide application, 27
hybridization, 26
microbial communities, 26
PCR, 27
DiScRIBinATE, 66
DNA microarrays, 31
E
EBI metagenomics, 70
Ecological suicide, 74
Endophytes, 7
Environmental cleanup technologies, 5
Environmental factors, 25
Environmental microbiology, 26
Extremophiles, 3
F
Fatty acid methyl esters (FAME), 24
Filter-aided sample preparation (FASP), 58
Fluorescence-activated cell sorter (FACS)
system, 36
Fluorescence in situ hybridization (FISH)
oligonucleotide, 26
PAHs, 26
rRNA-targeted probes, 26
Food security, 3, 17
Index