93
Pérez-Montaño F, Alías-Villegas C, Bellogín RA, del Cerro P, Espuny MR, Jiménez-Guerrero I,
López-Baena FJ, Ollero FJ, Cubo T (2014) Plant growth promotion in cereal and leguminous
agricultural important plants: from microorganism capacities to crop production. Microbiol
Res 169:325–336
Perkel JM (2012) Single-cell genomics: defining microbiology’s dark matter. BioTechniques
52:301–303
Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol
68:3094–3101
Philippot L, Raaijmakers JM, Lemanceau P, van der Putten WH (2013) Going back to the roots:
the microbial ecology of the rhizosphere. Nat Rev Microbiol 11:789–799
Pointing SB, Belnap J (2012) Microbial colonization and controls in dryland systems. Nat Rev
Microbiol 10:551–562
Pointing SB, Chana Y, Lacapa DC, Laua MCY, Jurgens JA, Farrell RL (2010) Highly specialized
microbial diversity in hyper-arid polar desert. Proc Natl Acad Sci U S A 107:1254–1254
Ponomarova O, Patil KR (2015) Metabolic interactions in microbial communities: untangling the
Gordian knot. Curr Opin Microbiol 27:37–44
Poretsky RS, Bano N, Buchan A, LeCleir G, Kleikemper J, Pickering M, Hollibaugh JT (2005)
Analysis of microbial gene transcripts in environmental samples. Appl Environ Microbiol
71:4121–4126
Potshangbam M, Devi SI, Sahoo D, Strobel GA (2017) Functional characterization of endophytic
fungal community associated with Oryza sativa L. and Zea mays L. Front Microbiol. https://
doi.org/10.3389/fmicb.2017.00325
Power AG (2010) Ecosystem services and agriculture: tradeoffs and synergies. Philos Trans R Soc
365:2959–2971
Prakash O, Sharma R, Rahi P, Karthikeyan N (2014) Role of microorganisms in plant nutrition
and health. In: Nutrient use efficiency: from basics to advances, pp 125–161. Springer-Nature,
Switzerland
Pride DT, Schoenfeld T (2008) Genome signature analysis of thermal virus metagenomes reveals
Archaea and thermophilic signatures. BMC Genomics 9:420
Priya H, Prasanna R, Ramakrishnan B, Bidyarani N, Babu S, Thapa S, Renuka N (2015) Influence
of cyanobacterial inoculation on the culturable microbiome and growth of rice. Microbiol Res.
https://doi.org/10.1016/j.micres.2014.12.011
Props R, Kerckhof FM, Rubbens P, De Vrieze J, Sanabria EH, Waegeman W, Monsieurs P,
Hammes F, Boon N (2017) Absolute quantification of microbial taxon abundances. ISME
J 11:584–587
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a
comprehensive online resource for quality checked and aligned ribosomal RNA sequence data
compatible with ARB. Nucleic Acids Res 35:7188–7196
Quemeneur M, Garrido F, Billard P, Breeze D, Leyyal C, Jauzeind M, Joulianb C (2016)
Community structure and functional arrA gene diversity associated with arsenic reduction and
release in an industrially contaminated soil. Geomicrobiol J 33:839–849
Ragauskas AJ, Williams CK, Davison BH, Britovsek G, Cairney J, Eckert CA et al (2006) The path
forward for biofuels and biomaterials. Science 311:484e9
Rajendhran J, Gunasekaran P (2011) Microbial phylogeny and diversity: small subunit ribosomal
RNA sequence analysis and beyond. Microbiol Res 166:99–110
Rajkumar M, Nagendran R, Lee KJ, Lee WH, Kim SZ (2006) Influence of plant growth promoting
bacteria and Cr6+ on the growth of Indian mustard. Chemosphere 62:741–748
Ram RJ, VerBerkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC II, Shah M, Hettich
RL, Banfield JF (2005) Community proteomics of a natural microbial biofilm. Science
308:1915–1920
Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, Walter JC, LaBaer
J (2004) Self-assembling protein microarrays. Science 305:86–90
References
Pérez-Montaño F, Alías-Villegas C, Bellogín RA, del Cerro P, Espuny MR, Jiménez-Guerrero I,
López-Baena FJ, Ollero FJ, Cubo T (2014) Plant growth promotion in cereal and leguminous
agricultural important plants: from microorganism capacities to crop production. Microbiol
Res 169:325–336
Perkel JM (2012) Single-cell genomics: defining microbiology’s dark matter. BioTechniques
52:301–303
Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol
68:3094–3101
Philippot L, Raaijmakers JM, Lemanceau P, van der Putten WH (2013) Going back to the roots:
the microbial ecology of the rhizosphere. Nat Rev Microbiol 11:789–799
Pointing SB, Belnap J (2012) Microbial colonization and controls in dryland systems. Nat Rev
Microbiol 10:551–562
Pointing SB, Chana Y, Lacapa DC, Laua MCY, Jurgens JA, Farrell RL (2010) Highly specialized
microbial diversity in hyper-arid polar desert. Proc Natl Acad Sci U S A 107:1254–1254
Ponomarova O, Patil KR (2015) Metabolic interactions in microbial communities: untangling the
Gordian knot. Curr Opin Microbiol 27:37–44
Poretsky RS, Bano N, Buchan A, LeCleir G, Kleikemper J, Pickering M, Hollibaugh JT (2005)
Analysis of microbial gene transcripts in environmental samples. Appl Environ Microbiol
71:4121–4126
Potshangbam M, Devi SI, Sahoo D, Strobel GA (2017) Functional characterization of endophytic
fungal community associated with Oryza sativa L. and Zea mays L. Front Microbiol. https://
doi.org/10.3389/fmicb.2017.00325
Power AG (2010) Ecosystem services and agriculture: tradeoffs and synergies. Philos Trans R Soc
365:2959–2971
Prakash O, Sharma R, Rahi P, Karthikeyan N (2014) Role of microorganisms in plant nutrition
and health. In: Nutrient use efficiency: from basics to advances, pp 125–161. Springer-Nature,
Switzerland
Pride DT, Schoenfeld T (2008) Genome signature analysis of thermal virus metagenomes reveals
Archaea and thermophilic signatures. BMC Genomics 9:420
Priya H, Prasanna R, Ramakrishnan B, Bidyarani N, Babu S, Thapa S, Renuka N (2015) Influence
of cyanobacterial inoculation on the culturable microbiome and growth of rice. Microbiol Res.
https://doi.org/10.1016/j.micres.2014.12.011
Props R, Kerckhof FM, Rubbens P, De Vrieze J, Sanabria EH, Waegeman W, Monsieurs P,
Hammes F, Boon N (2017) Absolute quantification of microbial taxon abundances. ISME
J 11:584–587
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a
comprehensive online resource for quality checked and aligned ribosomal RNA sequence data
compatible with ARB. Nucleic Acids Res 35:7188–7196
Quemeneur M, Garrido F, Billard P, Breeze D, Leyyal C, Jauzeind M, Joulianb C (2016)
Community structure and functional arrA gene diversity associated with arsenic reduction and
release in an industrially contaminated soil. Geomicrobiol J 33:839–849
Ragauskas AJ, Williams CK, Davison BH, Britovsek G, Cairney J, Eckert CA et al (2006) The path
forward for biofuels and biomaterials. Science 311:484e9
Rajendhran J, Gunasekaran P (2011) Microbial phylogeny and diversity: small subunit ribosomal
RNA sequence analysis and beyond. Microbiol Res 166:99–110
Rajkumar M, Nagendran R, Lee KJ, Lee WH, Kim SZ (2006) Influence of plant growth promoting
bacteria and Cr6+ on the growth of Indian mustard. Chemosphere 62:741–748
Ram RJ, VerBerkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC II, Shah M, Hettich
RL, Banfield JF (2005) Community proteomics of a natural microbial biofilm. Science
308:1915–1920
Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, Walter JC, LaBaer
J (2004) Self-assembling protein microarrays. Science 305:86–90
References