Mycobacterium tuberculosis H37Rv integral
membrane proteins by one-dimensional gel
electrophoresis and liquid chromatography
electrospray ionization tandem mass spectrometry. J Proteome Res 4(3):855–861
4. Cole ST, Brosch R, Parkhill J, Garnier T,
Churcher C, Harris D et al (1998) Deciphering
the biology of Mycobacterium tuberculosis from
the complete genome sequence. Nature 393
(6685):537–544
5. Camus JC, Pryor MJ, Me ´digue C, Cole ST
(2002) Re-annotation of the genome sequence
of Mycobacterium tuberculosis H37Rv. Microbiology 148(10):2967–2973
6. de Souza GA, Ma ˚len H, Søfteland T,
Saelensminde G, Prasad S, Jonassen I, Wiker
HG (2008) High accuracy mass spectrometry
analysis as a tool to verify and improve gene
annotation using Mycobacterium tuberculosis as
an example. BMC Genomics 9:316
7. Heunis T, Dippenaar A, Warren RM, van Helden PD, van der Merwe RG, Gey van Pittius
NC et al (2017) Proteogenomic investigation
of strain variation in clinical Mycobacterium
tuberculosis isolates. J Proteome Res 16
(10):3841–3851
8. Bespyatykh JA, Shitikov EA, Ilina EN (2017)
Proteomics for the investigation of mycobacteria. Acta Nat 9(1):15–25
9. Kelkar DS, Kumar D, Kumar P, Balakrishnan L,
Muthusamy B, Yadav AK et al (2011) Proteogenomic analysis of Mycobacterium tuberculosis
by high resolution mass spectrometry. Mol Cell
Proteomics 10(12):111.011627
10. Shitikov E, Kolchenko S, Mokrousov I,
Bespyatykh J, Ischenko D, Ilina E, Govorun V
(2017) Evolutionary pathway analysis and unified classification of east Asian lineage of Mycobacterium tuberculosis. Sci Rep 7(1):9227
11. Bespyatykh J, Smolyakov A, Guliaev A,
Shitikov E, Arapidi G, Butenko I et al (2019)
Proteogenomic analysis of Mycobacterium
tuberculosis Beijing B0/W148 cluster strains. J
Proteome 192:18–26
12. Bespyatykh J, Shitikov E, Guliaev A,
Smolyakov A, Klimina K, Veselovsky V et al
(2019) System OMICs analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster. Sci
Rep 9:19255
13. Bespyatykh J, Smolyakov AV, Arapidi GP, Shitikov EA (2019) Proteogenomic analysis of
Mycobacterium tuberculosis Beijing B0/W148
cluster. J Integr OMICS 9(2):1–81
14. Bradford MM (1976) A rapid and sensitive
method for the quantitation of microgram
quantities of protein utilizing the principle of
protein-dye
binding.
Anal
Biochem
72:248–254
Proteogenomic Analysis of Mycobacteria
201
membrane proteins by one-dimensional gel
electrophoresis and liquid chromatography
electrospray ionization tandem mass spectrometry. J Proteome Res 4(3):855–861
4. Cole ST, Brosch R, Parkhill J, Garnier T,
Churcher C, Harris D et al (1998) Deciphering
the biology of Mycobacterium tuberculosis from
the complete genome sequence. Nature 393
(6685):537–544
5. Camus JC, Pryor MJ, Me ´digue C, Cole ST
(2002) Re-annotation of the genome sequence
of Mycobacterium tuberculosis H37Rv. Microbiology 148(10):2967–2973
6. de Souza GA, Ma ˚len H, Søfteland T,
Saelensminde G, Prasad S, Jonassen I, Wiker
HG (2008) High accuracy mass spectrometry
analysis as a tool to verify and improve gene
annotation using Mycobacterium tuberculosis as
an example. BMC Genomics 9:316
7. Heunis T, Dippenaar A, Warren RM, van Helden PD, van der Merwe RG, Gey van Pittius
NC et al (2017) Proteogenomic investigation
of strain variation in clinical Mycobacterium
tuberculosis isolates. J Proteome Res 16
(10):3841–3851
8. Bespyatykh JA, Shitikov EA, Ilina EN (2017)
Proteomics for the investigation of mycobacteria. Acta Nat 9(1):15–25
9. Kelkar DS, Kumar D, Kumar P, Balakrishnan L,
Muthusamy B, Yadav AK et al (2011) Proteogenomic analysis of Mycobacterium tuberculosis
by high resolution mass spectrometry. Mol Cell
Proteomics 10(12):111.011627
10. Shitikov E, Kolchenko S, Mokrousov I,
Bespyatykh J, Ischenko D, Ilina E, Govorun V
(2017) Evolutionary pathway analysis and unified classification of east Asian lineage of Mycobacterium tuberculosis. Sci Rep 7(1):9227
11. Bespyatykh J, Smolyakov A, Guliaev A,
Shitikov E, Arapidi G, Butenko I et al (2019)
Proteogenomic analysis of Mycobacterium
tuberculosis Beijing B0/W148 cluster strains. J
Proteome 192:18–26
12. Bespyatykh J, Shitikov E, Guliaev A,
Smolyakov A, Klimina K, Veselovsky V et al
(2019) System OMICs analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster. Sci
Rep 9:19255
13. Bespyatykh J, Smolyakov AV, Arapidi GP, Shitikov EA (2019) Proteogenomic analysis of
Mycobacterium tuberculosis Beijing B0/W148
cluster. J Integr OMICS 9(2):1–81
14. Bradford MM (1976) A rapid and sensitive
method for the quantitation of microgram
quantities of protein utilizing the principle of
protein-dye
binding.
Anal
Biochem
72:248–254
Proteogenomic Analysis of Mycobacteria
201