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23. Shakeri, M., Ferrante, E., Tsogkas, S., Lippe, S., Kadoury, S., Kokkinos, I., Paragios, N.:
Prior-based coregistration and cosegmentation. Med. Image Comput. Comput.-Assist. Interv. –
MICCAI 2016 2, 529–537 (2016)
24. Benkarim, O.M., Piella, G., Gonzalez Ballester, M.A., Sanroma, G.: Enhanced probabilistic
label fusion by estimating label confidences through discriminative learning. Med. Image
Comput. Comput.-Assist. Interv. – MICCAI 2016 2, 505–512 (2016)
25. Arthofer, C., Morgan, P.S., Pitiot, A.: Hierarchical multi-atlas segmentation using label-specific
embeddings, target-specific templates and patch refinement. In: International Workshop on
Patch-Based Techniques in Medical Imaging, pp. 84–91 (2016)
26. Yushkevich, P.A., Piven, J., Cody Hazlett, H., Gimpel Smith, R., Ho, S., Gee, J.C., Gerig, G.:
User-guided 3d active contour segmentation of anatomical structures: significantly improved
efficiency and reliability. NeuroImage 31(3), 1116–1128 (2006)
27. CGAL: CGAL User and Reference Manual. CGAL Editorial Board, 4.9 ed. (2016)
28. Lesage, D., Angelini, E.D., Bloch, I., Funka-Lea, G.: A review of 3d vessel lumen segmentation
techniques: models, features and extraction schemes. Med. Image Anal. 13, 819–845 (2009)
29. Vermandel, M., Betrouni, N., Taschner, C., Vasseur, C., Rousseau, J.: From MIP to MRA
segmentation using fuzzy set theory. Comput. Med. Imaging Graph. 31, 128–140 (2007)
30. Faure, F., Duriez, C., Delingette, H., Allard, J., Gilles, B., Marchesseau, S., Talbot, H.,
Courtecuisse, H., Bousquet, G., Peterlik, I., Cotin, S.: SOFA: a multi-model framework
for interactive physical simulation. In: Soft Tissue Biomechanical Modeling for Computer
Assisted Surgery, pp. 283–321. Springer, Berlin/Heidelberg (2012)
31. Reinertsen, I., Descoteaux, M., Siddiqi, K., Collins, D.L.: Validation of vessel-based registration for correction of brain-shift. Med. Image Anal. 11, 374–388 (2007)
32. Wittek, A., Hawkins, T., Miller, K.: On the unimportance of constitutive models in computing
brain deformation for image-guided surgery. Biomech. Model. Mechanobiol. 8(1), 77–84
(2009)
33. Schiavone, P., Chassat, F., Boudou, T., Promayon, E., Valdivia, F., Payan, Y.: In vivo
measurement of human brain elasticity using a light aspiration device. Med. Image Anal. 13,
673–678 (2009)
34. Muller, M., Dorsey, J., McMillan, L., Jagnow, R., Cutler, B.: Stable real-time deformations.
In: Proceedings of ACM SIGGRAPH Symposium on Computer Animation (SCA), pp. 49–54
(2002)
35. Besl, P.J., McKay, N.D.: A method for registration of 3-D shapes. IEEE Trans. Pattern Anal.
Mach. Intell. 14(2), 239–256 (1992)
36. Saupin, G., Duriez, C., Cotin, S., Grisoni, L.: Efficient contact modeling using compliance
warping. In: Computer Graphics International, Istambul (2008)
37. Courtecuisse, H., Peterlik, I., Trivisonne, R., Duriez, C., Cotin, S.: Constraint-based
simulation for non-rigid real-time registration. In: Medicine Meets Virtual Reality 21:
NextMed/MMVR21, vol. 196, pp. 76–82. IOS Press, Amsterdam (2014)
38. Reinertsen, I., Lindseth, F., Askeland, C., Iversen, D.H., Unsgard, G.: Intra-operative correction
of brain-shift. Acta Neurochirurgica 156, 1301–1310 (2014)
39. Gronningstaeter, A., Kleven, A., Ommedal, S., Aarseth, T.E., Lie, T., Lindseth, F., Lango, T.,
Unsgard, G.: SonoWand, an ultrasound-based neuronavigation system. Neurosurgery 47(6),
1373–1380 (2001)
40. Reinertsen, I., Lindseth, F., Unsgard, G., Collins, D.L.: Clinical validation of vessel-based
registration for correction of brain-shift. Med. Image Anal. 11, 673–684 (2007)
41. Askeland, C., Solberg, O.V., Beate, J.B.L., Reinertsen, I., Tangen, G.A., Hofstad, E.F., Iversen,
D.H., Vapenstad, C., Selbekk, T., Lango, T., Hernes, T.A., Leira, H.O., Unsgard, G., Lindseth,
F.: CustusX: an open-source research platform for image-guided therapy. Int. J. Comput. Assist.
Radiol. Surgery 11(4), 505–519 (2015)
42. Morin, F., Courtecuisse, H., Reinertsen, I., Lann, F.L., Palombi, O., Payan, Y., Chabanas, M.:
Resection-induced brain-shift compensation using vessel-based methods. In: Proceedings of
SPIE Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling,
vol. 10576, pp. 105760Q–105760Q–6 (2018)
H. Courtecuisse et al.
23. Shakeri, M., Ferrante, E., Tsogkas, S., Lippe, S., Kadoury, S., Kokkinos, I., Paragios, N.:
Prior-based coregistration and cosegmentation. Med. Image Comput. Comput.-Assist. Interv. –
MICCAI 2016 2, 529–537 (2016)
24. Benkarim, O.M., Piella, G., Gonzalez Ballester, M.A., Sanroma, G.: Enhanced probabilistic
label fusion by estimating label confidences through discriminative learning. Med. Image
Comput. Comput.-Assist. Interv. – MICCAI 2016 2, 505–512 (2016)
25. Arthofer, C., Morgan, P.S., Pitiot, A.: Hierarchical multi-atlas segmentation using label-specific
embeddings, target-specific templates and patch refinement. In: International Workshop on
Patch-Based Techniques in Medical Imaging, pp. 84–91 (2016)
26. Yushkevich, P.A., Piven, J., Cody Hazlett, H., Gimpel Smith, R., Ho, S., Gee, J.C., Gerig, G.:
User-guided 3d active contour segmentation of anatomical structures: significantly improved
efficiency and reliability. NeuroImage 31(3), 1116–1128 (2006)
27. CGAL: CGAL User and Reference Manual. CGAL Editorial Board, 4.9 ed. (2016)
28. Lesage, D., Angelini, E.D., Bloch, I., Funka-Lea, G.: A review of 3d vessel lumen segmentation
techniques: models, features and extraction schemes. Med. Image Anal. 13, 819–845 (2009)
29. Vermandel, M., Betrouni, N., Taschner, C., Vasseur, C., Rousseau, J.: From MIP to MRA
segmentation using fuzzy set theory. Comput. Med. Imaging Graph. 31, 128–140 (2007)
30. Faure, F., Duriez, C., Delingette, H., Allard, J., Gilles, B., Marchesseau, S., Talbot, H.,
Courtecuisse, H., Bousquet, G., Peterlik, I., Cotin, S.: SOFA: a multi-model framework
for interactive physical simulation. In: Soft Tissue Biomechanical Modeling for Computer
Assisted Surgery, pp. 283–321. Springer, Berlin/Heidelberg (2012)
31. Reinertsen, I., Descoteaux, M., Siddiqi, K., Collins, D.L.: Validation of vessel-based registration for correction of brain-shift. Med. Image Anal. 11, 374–388 (2007)
32. Wittek, A., Hawkins, T., Miller, K.: On the unimportance of constitutive models in computing
brain deformation for image-guided surgery. Biomech. Model. Mechanobiol. 8(1), 77–84
(2009)
33. Schiavone, P., Chassat, F., Boudou, T., Promayon, E., Valdivia, F., Payan, Y.: In vivo
measurement of human brain elasticity using a light aspiration device. Med. Image Anal. 13,
673–678 (2009)
34. Muller, M., Dorsey, J., McMillan, L., Jagnow, R., Cutler, B.: Stable real-time deformations.
In: Proceedings of ACM SIGGRAPH Symposium on Computer Animation (SCA), pp. 49–54
(2002)
35. Besl, P.J., McKay, N.D.: A method for registration of 3-D shapes. IEEE Trans. Pattern Anal.
Mach. Intell. 14(2), 239–256 (1992)
36. Saupin, G., Duriez, C., Cotin, S., Grisoni, L.: Efficient contact modeling using compliance
warping. In: Computer Graphics International, Istambul (2008)
37. Courtecuisse, H., Peterlik, I., Trivisonne, R., Duriez, C., Cotin, S.: Constraint-based
simulation for non-rigid real-time registration. In: Medicine Meets Virtual Reality 21:
NextMed/MMVR21, vol. 196, pp. 76–82. IOS Press, Amsterdam (2014)
38. Reinertsen, I., Lindseth, F., Askeland, C., Iversen, D.H., Unsgard, G.: Intra-operative correction
of brain-shift. Acta Neurochirurgica 156, 1301–1310 (2014)
39. Gronningstaeter, A., Kleven, A., Ommedal, S., Aarseth, T.E., Lie, T., Lindseth, F., Lango, T.,
Unsgard, G.: SonoWand, an ultrasound-based neuronavigation system. Neurosurgery 47(6),
1373–1380 (2001)
40. Reinertsen, I., Lindseth, F., Unsgard, G., Collins, D.L.: Clinical validation of vessel-based
registration for correction of brain-shift. Med. Image Anal. 11, 673–684 (2007)
41. Askeland, C., Solberg, O.V., Beate, J.B.L., Reinertsen, I., Tangen, G.A., Hofstad, E.F., Iversen,
D.H., Vapenstad, C., Selbekk, T., Lango, T., Hernes, T.A., Leira, H.O., Unsgard, G., Lindseth,
F.: CustusX: an open-source research platform for image-guided therapy. Int. J. Comput. Assist.
Radiol. Surgery 11(4), 505–519 (2015)
42. Morin, F., Courtecuisse, H., Reinertsen, I., Lann, F.L., Palombi, O., Payan, Y., Chabanas, M.:
Resection-induced brain-shift compensation using vessel-based methods. In: Proceedings of
SPIE Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling,
vol. 10576, pp. 105760Q–105760Q–6 (2018)