Raherison ES, Giguère I, Caron S, Lamara M, MacKay JJ (2015) Modular organization of the
white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary
signatures. New Phytol 207:172–187
Rauf M, Arif M, Fisahn J, Xue GP, Balazadeh S, Mueller-Roeber B (2013) NAC transcription
factor speedy hyponastic growth regulates flooding-induced leaf movement in Arabidopsis.
Plant Cell 25:4941–4955
Reece-Hoyes JS, Deplancke B, Shingles J, Grove CA, Hope IA, Walhout AJ (2005) A compendium
of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription
regulatory networks. Genome Biol 6:R110
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam K, Pineda O et al
(2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science 290:2105–2110
Rueda-López M, García-Gutiérrez A, Cánovas FM, Ávila C (2013) The family of Dof transcription
factors in pine. Trees 27:1547–1557
Rushton PJ, Torres JT, Parniske M, Wernert P, Hahlbrock K, Somssich IE (1996) Interaction
of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of
parsley PR1 genes. EMBO J 15:5690–5700
Rushton PJ, Bokowiec MT, Han S, Zhang H, Brannock JF, Chen X, Laudeman TW, Timko MP
(2008) Tobacco transcription factors: novel insights into transcriptional regulation in the
Solanaceae. Plant Physiol 147:280–295
Scofield S, Dewitte W, Nieuwland J, Murray JAH (2013) The Arabidopsis homeobox gene SHOOT
MERISTEMLESS has cellular and meristem-organisational roles with differential requirements
for cytokinin and CYCD3 activity. Plant J 75:53–66
Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y et al (2002) Monitoring the expression
profiles of 7000 Arabidopsis genes under drought, cold and high salinity stresses using a fulllength cDNA microarray. Plant J 31:279–292
Seo PJ, Kim SG, Park CM (2008) Membrane-bound transcription factors in plants. Trends Plant Sci
13:550–556
Seo PJ, Kim MJ, Park JY, Kim SY, Jeon J, Lee YH, Kim J, Park CM (2010) Cold activation of
a plasma membrane-tethered NAC transcription factor induces a pathogen resistance response
in Arabidopsis. Plant J 61:661–671
Shang H, Li W, Zou C, Yuan Y (2013) Analyses of the NAC transcription factor gene family
in Gossypium raimondii Ulbr.: chromosomal location, structure, phylogeny, and expression
patterns. J Integr Plant Biol 55:663–676
Shao H, Wang H, Tang X (2015) NAC transcription factors in plant multiple abiotic stress
responses: progress and prospects. Front Plant Sci 6:902
Shen H, Yin Y, Chen F, Xu Y, Dixon RA (2009) A bioinformatic analysis of NAC genes for plant
cell wall development in relation to lignocellulosic bioenergy production. Bioenerg Res
2:217–232
Shen H, Liu C, Zhang Y, Meng X, Zhou X, Chu C et al (2012) OsWRKY30 is activated by MAP
kinases to confer drought tolerance in rice. Plant Mol Biol 80:241–253
Shiu SH, Shih MC, Li WH (2005) Transcription factor families have much higher expansion rates
in plants than in animals. Plant Physiol 139:18–26
Silva PA, Silva JCF, Caetan HDN, Machado JPB, Mendes GC, Reis PAB et al (2015)
Comprehensive analysis of the endoplasmic reticulum stress response in the soybean genome:
conserved and plant-specific features. BMC Genomics 16:783
Singh AK, Sharma V, Pal AK, Acharya V, Ahuja PS (2013) Genome-wide organization and
expression profiling of the NAC transcription factor family in potato (Solanum tuberosum L.).
DNA Res 20:403–423
Sjostrom E (1993) Wood chemistry. Academic Press, San Diego
Souer E, van Houwelingen A, Kloos D, Mol J, Koes R (1996) The no apical meristem gene of
Petunia is required for pattern formation in embryos and flowers and is expressed at meristem
and primordia boundaries. Cell 85:159–170
220
M. B. Pascual et al.
white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary
signatures. New Phytol 207:172–187
Rauf M, Arif M, Fisahn J, Xue GP, Balazadeh S, Mueller-Roeber B (2013) NAC transcription
factor speedy hyponastic growth regulates flooding-induced leaf movement in Arabidopsis.
Plant Cell 25:4941–4955
Reece-Hoyes JS, Deplancke B, Shingles J, Grove CA, Hope IA, Walhout AJ (2005) A compendium
of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription
regulatory networks. Genome Biol 6:R110
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam K, Pineda O et al
(2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science 290:2105–2110
Rueda-López M, García-Gutiérrez A, Cánovas FM, Ávila C (2013) The family of Dof transcription
factors in pine. Trees 27:1547–1557
Rushton PJ, Torres JT, Parniske M, Wernert P, Hahlbrock K, Somssich IE (1996) Interaction
of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of
parsley PR1 genes. EMBO J 15:5690–5700
Rushton PJ, Bokowiec MT, Han S, Zhang H, Brannock JF, Chen X, Laudeman TW, Timko MP
(2008) Tobacco transcription factors: novel insights into transcriptional regulation in the
Solanaceae. Plant Physiol 147:280–295
Scofield S, Dewitte W, Nieuwland J, Murray JAH (2013) The Arabidopsis homeobox gene SHOOT
MERISTEMLESS has cellular and meristem-organisational roles with differential requirements
for cytokinin and CYCD3 activity. Plant J 75:53–66
Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y et al (2002) Monitoring the expression
profiles of 7000 Arabidopsis genes under drought, cold and high salinity stresses using a fulllength cDNA microarray. Plant J 31:279–292
Seo PJ, Kim SG, Park CM (2008) Membrane-bound transcription factors in plants. Trends Plant Sci
13:550–556
Seo PJ, Kim MJ, Park JY, Kim SY, Jeon J, Lee YH, Kim J, Park CM (2010) Cold activation of
a plasma membrane-tethered NAC transcription factor induces a pathogen resistance response
in Arabidopsis. Plant J 61:661–671
Shang H, Li W, Zou C, Yuan Y (2013) Analyses of the NAC transcription factor gene family
in Gossypium raimondii Ulbr.: chromosomal location, structure, phylogeny, and expression
patterns. J Integr Plant Biol 55:663–676
Shao H, Wang H, Tang X (2015) NAC transcription factors in plant multiple abiotic stress
responses: progress and prospects. Front Plant Sci 6:902
Shen H, Yin Y, Chen F, Xu Y, Dixon RA (2009) A bioinformatic analysis of NAC genes for plant
cell wall development in relation to lignocellulosic bioenergy production. Bioenerg Res
2:217–232
Shen H, Liu C, Zhang Y, Meng X, Zhou X, Chu C et al (2012) OsWRKY30 is activated by MAP
kinases to confer drought tolerance in rice. Plant Mol Biol 80:241–253
Shiu SH, Shih MC, Li WH (2005) Transcription factor families have much higher expansion rates
in plants than in animals. Plant Physiol 139:18–26
Silva PA, Silva JCF, Caetan HDN, Machado JPB, Mendes GC, Reis PAB et al (2015)
Comprehensive analysis of the endoplasmic reticulum stress response in the soybean genome:
conserved and plant-specific features. BMC Genomics 16:783
Singh AK, Sharma V, Pal AK, Acharya V, Ahuja PS (2013) Genome-wide organization and
expression profiling of the NAC transcription factor family in potato (Solanum tuberosum L.).
DNA Res 20:403–423
Sjostrom E (1993) Wood chemistry. Academic Press, San Diego
Souer E, van Houwelingen A, Kloos D, Mol J, Koes R (1996) The no apical meristem gene of
Petunia is required for pattern formation in embryos and flowers and is expressed at meristem
and primordia boundaries. Cell 85:159–170
220
M. B. Pascual et al.