Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR,
Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE,
McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT,
Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer
GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM (2005) Genome
sequencing in microfabricated high-density picolitre reactors. Nature 437:376–380
Martinez-Cano DJ, Reyes-Prieto M, Martinez-Romero E, Partida-Martinez LP, Latorre A, Moya A,
Delaye L (2014) Evolution of small prokaryotic genomes. Front Microbiol 5:742
Maxam AM, Gilbert W (1977) A new method for sequencing DNA. Proc Natl Acad Sci U S A
74(2):560–564
McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP,
Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC (2006) AgBase: a functional
genomics resource for agriculture. BMC Genomics 7:229
McCarthy FM, Gresham CR, Buza TJ, Chouvarine P, Pillai LR, Kumar R, Ozkan S, Wang H,
Manda P, Arick T, Bridges SM, Burgess SC (2011) AgBase: supporting functional modeling in
agricultural organisms. Nucleic Acids Res 39(Database issue):D497–D506
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K,
Altshuler D, Gabriel S, Daly M, DePristo MA (2010) The genome analysis toolkit: a
MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res
20(9):1297–1303
Metzker ML (2010) Sequencing technologies – the next generation. Nat Rev Genet 11(1):31–46
Michael TP, Jackson S (2013) The first 50 plant genomes. Plant Genome 6(2). https://doi.org/10.
3835/plantgenome2013.3803.0001in
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J,
Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H,
Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H,
Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A,
McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY,
Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F,
Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D,
Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q (2015) The pineapple
genome and the evolution of CAM photosynthesis. Nat Genet 47(12):1435–1442
Mirsky AE, Ris H (1951) The desoxyribonucleic acid content of animal cells and its evolutionary
significance. J Gen Physiol 34:451–462
Mohanta TK, Bae H (2015) The diversity of fungal genome. Biol Proced Online 17:8
Molina J, Hazzouri KM, Nickrent D, Geisler M, Meyer RS, Pentony MM, Flowers JM, Pelser P,
Barcelona J, Inovejas SA, Uy I, Yuan W, Wilkins O, Michel CI, Locklear S, Concepcion GP,
Purugganan MD (2014) Possible loss of the chloroplast genome in the parasitic flowering plant
Rafflesia lagascae (Rafflesiaceae). Mol Biol Evol 31(4):793–803
Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J,
Katinka M, Hohmann-Marriott MF, Piganeau G, Rouze P, Da Silva C, Wincker P, Van de
Peer Y, Vandepoele K (2012) Gene functionalities and genome structure in Bathycoccus
prasinos reflect cellular specializations at the base of the green lineage. Genome Biol 13(8):R74
Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD,
Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC,
Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J,
Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN (2013) The genome
sequence of the most widely cultivated cacao type and its use to identify candidate genes
regulating pod color. Genome Biol 14(6):r53
Munoz-Gomez SA, Mejia-Franco FG, Durnin K, Colp M, Grisdale CJ, Archibald JM, Slamovits
CH (2017) The new red algal subphylum Proteorhodophytina comprises the largest and most
divergent plastid genomes known. Curr Biol 27(11):1677–1684.e1674
184
D. G. Peterson and M. Arick
Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE,
McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT,
Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer
GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM (2005) Genome
sequencing in microfabricated high-density picolitre reactors. Nature 437:376–380
Martinez-Cano DJ, Reyes-Prieto M, Martinez-Romero E, Partida-Martinez LP, Latorre A, Moya A,
Delaye L (2014) Evolution of small prokaryotic genomes. Front Microbiol 5:742
Maxam AM, Gilbert W (1977) A new method for sequencing DNA. Proc Natl Acad Sci U S A
74(2):560–564
McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP,
Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC (2006) AgBase: a functional
genomics resource for agriculture. BMC Genomics 7:229
McCarthy FM, Gresham CR, Buza TJ, Chouvarine P, Pillai LR, Kumar R, Ozkan S, Wang H,
Manda P, Arick T, Bridges SM, Burgess SC (2011) AgBase: supporting functional modeling in
agricultural organisms. Nucleic Acids Res 39(Database issue):D497–D506
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K,
Altshuler D, Gabriel S, Daly M, DePristo MA (2010) The genome analysis toolkit: a
MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res
20(9):1297–1303
Metzker ML (2010) Sequencing technologies – the next generation. Nat Rev Genet 11(1):31–46
Michael TP, Jackson S (2013) The first 50 plant genomes. Plant Genome 6(2). https://doi.org/10.
3835/plantgenome2013.3803.0001in
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J,
Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H,
Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H,
Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A,
McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY,
Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F,
Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D,
Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q (2015) The pineapple
genome and the evolution of CAM photosynthesis. Nat Genet 47(12):1435–1442
Mirsky AE, Ris H (1951) The desoxyribonucleic acid content of animal cells and its evolutionary
significance. J Gen Physiol 34:451–462
Mohanta TK, Bae H (2015) The diversity of fungal genome. Biol Proced Online 17:8
Molina J, Hazzouri KM, Nickrent D, Geisler M, Meyer RS, Pentony MM, Flowers JM, Pelser P,
Barcelona J, Inovejas SA, Uy I, Yuan W, Wilkins O, Michel CI, Locklear S, Concepcion GP,
Purugganan MD (2014) Possible loss of the chloroplast genome in the parasitic flowering plant
Rafflesia lagascae (Rafflesiaceae). Mol Biol Evol 31(4):793–803
Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J,
Katinka M, Hohmann-Marriott MF, Piganeau G, Rouze P, Da Silva C, Wincker P, Van de
Peer Y, Vandepoele K (2012) Gene functionalities and genome structure in Bathycoccus
prasinos reflect cellular specializations at the base of the green lineage. Genome Biol 13(8):R74
Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD,
Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC,
Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J,
Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN (2013) The genome
sequence of the most widely cultivated cacao type and its use to identify candidate genes
regulating pod color. Genome Biol 14(6):r53
Munoz-Gomez SA, Mejia-Franco FG, Durnin K, Colp M, Grisdale CJ, Archibald JM, Slamovits
CH (2017) The new red algal subphylum Proteorhodophytina comprises the largest and most
divergent plastid genomes known. Curr Biol 27(11):1677–1684.e1674
184
D. G. Peterson and M. Arick