Ge Y, Liu J, Zeng M, He J, Qin P, Huang H, Xu L (2016) Identification of WOX family genes in
Selaginella kraussiana for studies on stem cells and regeneration in lycophytes. Front Plant Sci 7:93
Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH
(2004) Open mass spectrometry search algorithm. J Proteome Res 3(5):958–964
Gelderblom HR (1996) Structure and classification of viruses. In: Barron S (ed) Medical microbiology, 4th edn. University of Texas Medical Branch at Galveston, Galveston
GenomeWeb News Staff Writer (2012) Helicos biosciences files for chapter 11 bankruptcy
protection. GenomeWeb News. https://www.genomeweb.com/sequencing/helicos-biosci
ences-files-chapter-11-bankruptcy-protection
Gluch A, Vidakovic M, Bode J (2008) Scaffold/matrix attachment regions (S/MARs): relevance for
disease and therapy. In: Klussmann E, Scott J (eds) Handbook of experimental pharmacology.
Springer, Berlin, pp 67–103
Gmitter FG Jr, Chen C, Machado MA, Alves de Souza A, Ollitrault P, Froehlicher Y, Shimizu T
(2012) Citrus genomics. Tree Genet Genomes 8:611–626
Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea
TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A,
Nusbaum C, Lander ES, Jaffe DB (2011) High-quality draft assemblies of mammalian genomes
from massively parallel sequence data. Proc Natl Acad Sci U S A 108(4):1513–1518
Greenleaf WJ, Sidow A (2014) The future of sequencing: convergence of intelligent design and
market Darwinism. Genome Biol 15(3):303
Gregory TR (2005) Genome size evolution in animals. In: Gregory TR (ed) The evolution of the
genome. Elsevier Academic Press, Boston, pp 3–87
Gregory TR (2018) Animal genome size database. http://www.genomesize.com. Accessed 1 Feb
2018
Guan R, Zhao Y, Zhang H, Fan G, Liu X, Zhou W, Shi C, Wang J, Liu W, Liang X, Fu Y, Ma K,
Zhao L, Zhang F, Lu Z, Lee SM, Xu X, Wang J, Yang H, Fu C, Ge S, Chen W (2016) Draft
genome of the living fossil Ginkgo biloba. GigaScience 5(1):49
Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome
assemblies. Bioinformatics 29(8):1072–1075
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D,
Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R,
William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A (2013) De novo
transcript sequence reconstruction from RNA-seq using the Trinity platform for reference
generation and analysis. Nat Protoc 8(8):1494–1512
Hane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S,
Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW,
McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB (2017) A comprehensive draft
genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plantmicrobe interactions and legume evolution. Plant Biotechnol J 15(3):318–330
Haque F, Li J, Wu HC, Liang XJ, Guo P (2013) Solid-state and biological nanopore for real-time
sensing of single chemical and sequencing of DNA. Nano Today 8(1):56–74
Haston E, Richardson JE, Stevens PF, Chase MW, Harris DJ (2009) The Linear Angiosperm
Phylogeny Group (LAPG) III: a linear sequence of the families in APG III. Bot J Linn Soc
161(2):128–131
Heather JM, Chain B (2016) The sequence of sequencers: the history of sequencing DNA.
Genomics 107(1):1–8
Hilgartner S (2017) Shaping news and making history. In: Reordering life: knowledge and control
in the genomics revolution. The MIT Press, Cambridge, pp 185–222
Hoffman EA, Frey BL, Smith LM, Auble DT (2015) Formaldehyde crosslinking: a tool for the
study of chromatin complexes. J Biol Chem 290(44):26404–26411
Hogeweg P (2011) The roots of bioinformatics in theoretical biology. PLoS Comput Biol 7(3):
e1002021
180
D. G. Peterson and M. Arick
Selaginella kraussiana for studies on stem cells and regeneration in lycophytes. Front Plant Sci 7:93
Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH
(2004) Open mass spectrometry search algorithm. J Proteome Res 3(5):958–964
Gelderblom HR (1996) Structure and classification of viruses. In: Barron S (ed) Medical microbiology, 4th edn. University of Texas Medical Branch at Galveston, Galveston
GenomeWeb News Staff Writer (2012) Helicos biosciences files for chapter 11 bankruptcy
protection. GenomeWeb News. https://www.genomeweb.com/sequencing/helicos-biosci
ences-files-chapter-11-bankruptcy-protection
Gluch A, Vidakovic M, Bode J (2008) Scaffold/matrix attachment regions (S/MARs): relevance for
disease and therapy. In: Klussmann E, Scott J (eds) Handbook of experimental pharmacology.
Springer, Berlin, pp 67–103
Gmitter FG Jr, Chen C, Machado MA, Alves de Souza A, Ollitrault P, Froehlicher Y, Shimizu T
(2012) Citrus genomics. Tree Genet Genomes 8:611–626
Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea
TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A,
Nusbaum C, Lander ES, Jaffe DB (2011) High-quality draft assemblies of mammalian genomes
from massively parallel sequence data. Proc Natl Acad Sci U S A 108(4):1513–1518
Greenleaf WJ, Sidow A (2014) The future of sequencing: convergence of intelligent design and
market Darwinism. Genome Biol 15(3):303
Gregory TR (2005) Genome size evolution in animals. In: Gregory TR (ed) The evolution of the
genome. Elsevier Academic Press, Boston, pp 3–87
Gregory TR (2018) Animal genome size database. http://www.genomesize.com. Accessed 1 Feb
2018
Guan R, Zhao Y, Zhang H, Fan G, Liu X, Zhou W, Shi C, Wang J, Liu W, Liang X, Fu Y, Ma K,
Zhao L, Zhang F, Lu Z, Lee SM, Xu X, Wang J, Yang H, Fu C, Ge S, Chen W (2016) Draft
genome of the living fossil Ginkgo biloba. GigaScience 5(1):49
Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome
assemblies. Bioinformatics 29(8):1072–1075
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D,
Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R,
William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A (2013) De novo
transcript sequence reconstruction from RNA-seq using the Trinity platform for reference
generation and analysis. Nat Protoc 8(8):1494–1512
Hane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S,
Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW,
McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB (2017) A comprehensive draft
genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plantmicrobe interactions and legume evolution. Plant Biotechnol J 15(3):318–330
Haque F, Li J, Wu HC, Liang XJ, Guo P (2013) Solid-state and biological nanopore for real-time
sensing of single chemical and sequencing of DNA. Nano Today 8(1):56–74
Haston E, Richardson JE, Stevens PF, Chase MW, Harris DJ (2009) The Linear Angiosperm
Phylogeny Group (LAPG) III: a linear sequence of the families in APG III. Bot J Linn Soc
161(2):128–131
Heather JM, Chain B (2016) The sequence of sequencers: the history of sequencing DNA.
Genomics 107(1):1–8
Hilgartner S (2017) Shaping news and making history. In: Reordering life: knowledge and control
in the genomics revolution. The MIT Press, Cambridge, pp 185–222
Hoffman EA, Frey BL, Smith LM, Auble DT (2015) Formaldehyde crosslinking: a tool for the
study of chromatin complexes. J Biol Chem 290(44):26404–26411
Hogeweg P (2011) The roots of bioinformatics in theoretical biology. PLoS Comput Biol 7(3):
e1002021
180
D. G. Peterson and M. Arick