Trifolium pratense
• 418 Mb
• red
clover
• n
¼ 7
• DC
•
Leguminosae
• I
345,991 36,978
39,051
22,683 135,023
5 47,398
k
GCA_900079335.1
• Ištvánek
et al. (2014)
Co-author Peterson was involved in sequencing those species in bold text
a
Genome sequence data was obtained from the National Center for Biotechnology Information (NCBI) Assembly Database (https://www.ncbi.nlm.nih.gov/
assembly/) on October 10, 2017. On the Assembly home page, the Browse by Organism
link was selected. In the search bar at the top of the page, the delimiter
for plants
– plants (taxid: 3193)
– was entered. The plant genome assemblies were sorted using the Assembly Level toggle button. Those plants with an assembly
level of
“complete genome” or
“chromosome” and a RefSeq category of
“reference genome” or
“representative genome” were included in the table. Note that, at
the time of this writing, no charophyte green algae, bryophytes, pteridophytes, lycopods, or gymnosperms have genome assemblies of sufficient quality to be
included in the table
b
All genome size and chromosome number values are from Bennett and Leitch (2012a) unless indicated otherwise
c
Sequencing strategies are B
BAC-by-BAC (Sanger), S
Sanger shotgun, 4
454, I
Illumina, P
PacBio, L
SOLiD, H
Hi-C
d
Palenik et al. (2007)
e
Calculated from NCBI Genome pages. Gene values include nuclear genes and genes unassigned to chromosomes, plastids, or mitochondria
f
Worden et al. (2009)
g
Moreau et al. (2012)
h
Blanc-Mathieu et al. (2014)
i
Oh et al. (2010)
j
Dassanayake et al. (2011)
k
Gene number obtained from genome reference paper in far right column
l
Rice et al. (2015)
m
Gene number from https://genomevolution.org/CoGe/GenomeInfo.pl?gid¼29027
n
Gmitter et al. (2012)
o
Gene number from http://www.uniprot.org/proteomes/UP000029120
p
Lowry et al. (2013)
q
Copetti et al. (2015)
r
Katayama (1995)
s
Chagné (2015)
t
Hutcheon et al. (2010)
u
Gene number from https://www.ebi.ac.uk/ena/data/view/GCA_000004655.2
v
Wang et al. (2014b)
Sequencing Plant Genomes
163
• 418 Mb
• red
clover
• n
¼ 7
• DC
•
Leguminosae
• I
345,991 36,978
39,051
22,683 135,023
5 47,398
k
GCA_900079335.1
• Ištvánek
et al. (2014)
Co-author Peterson was involved in sequencing those species in bold text
a
Genome sequence data was obtained from the National Center for Biotechnology Information (NCBI) Assembly Database (https://www.ncbi.nlm.nih.gov/
assembly/) on October 10, 2017. On the Assembly home page, the Browse by Organism
link was selected. In the search bar at the top of the page, the delimiter
for plants
– plants (taxid: 3193)
– was entered. The plant genome assemblies were sorted using the Assembly Level toggle button. Those plants with an assembly
level of
“complete genome” or
“chromosome” and a RefSeq category of
“reference genome” or
“representative genome” were included in the table. Note that, at
the time of this writing, no charophyte green algae, bryophytes, pteridophytes, lycopods, or gymnosperms have genome assemblies of sufficient quality to be
included in the table
b
All genome size and chromosome number values are from Bennett and Leitch (2012a) unless indicated otherwise
c
Sequencing strategies are B
BAC-by-BAC (Sanger), S
Sanger shotgun, 4
454, I
Illumina, P
PacBio, L
SOLiD, H
Hi-C
d
Palenik et al. (2007)
e
Calculated from NCBI Genome pages. Gene values include nuclear genes and genes unassigned to chromosomes, plastids, or mitochondria
f
Worden et al. (2009)
g
Moreau et al. (2012)
h
Blanc-Mathieu et al. (2014)
i
Oh et al. (2010)
j
Dassanayake et al. (2011)
k
Gene number obtained from genome reference paper in far right column
l
Rice et al. (2015)
m
Gene number from https://genomevolution.org/CoGe/GenomeInfo.pl?gid¼29027
n
Gmitter et al. (2012)
o
Gene number from http://www.uniprot.org/proteomes/UP000029120
p
Lowry et al. (2013)
q
Copetti et al. (2015)
r
Katayama (1995)
s
Chagné (2015)
t
Hutcheon et al. (2010)
u
Gene number from https://www.ebi.ac.uk/ena/data/view/GCA_000004655.2
v
Wang et al. (2014b)
Sequencing Plant Genomes
163