Theis KR, Dheilly NM, Klassen JL, Brucker RM, Baines JF, Bosch TCG, Cryan JF, Gilbert SF,
Goodnight CJ, Lloyd EA, Sapp J, Vandenkoornhuyse P, Zilber-Rosenberg I, Rosenberg E,
Bordenstein SR (2016) Getting the hologenome concept right: an ecoevolutionary framework
for hosts and their microbiomes. mSystems 1:e00028-16. https://doi.org/10.1128/mSystems.
00028-16
Thompson JR, Polz MF (2006) Dynamics of Vibrio populations and their role in environmental
nutrient cycling. In: Thompson FL, Austin B, Swings J (eds) The biology of Vibrios. ASM
Press, Washington, DC
Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ (2009) Evidence for light
perception in a bioluminescent organ. Proc Natl Acad Sci 106:9836–9841. https://doi.org/10.
1073/pnas.0904571106
Travers MA, Boettcher Miller K, Roque A, Friedman CS (2015) Bacterial diseases in marine
bivalves. J Invertebr Pathol 131:11–31. https://doi.org/10.1016/j.jip.2015.07.010
Tucker NP, LeBrun NE, DixonR HMI (2010) There’s NO stopping NsrR, a global regulator of the
bacterial no stress response. Trends Microbiol 18:149–156. https://doi.org/10.1016/j.tim.2009.
12.009
Vanhove AS, Rubio TP, Nguyen AN, Lemire A, Roche D, Nicod J, Vergnes A, Poirier AC,
Disconzi E, Bachère E, Le Roux F, Jacq A, Charrière GM, Destoumieux-Garzón D (2016)
Copper homeostasis at the host vibrio interface: lessons from intracellular vibrio
transcriptomics. Environ Microbiol 18:875–888. https://doi.org/10.1111/1462-2920.13083
Vezzulli L, Stagnaro L, Grande C, Tassistro G, Canesi L, Pruzzo C (2018) Comparative 16SrDNA
gene-based microbiota profiles of the Pacific oyster (Crassostrea gigas) and the mediterranean
mussel (Mytilus galloprovincialis) from a shellfish farm (Ligurian Sea, Italy). Microb Ecol
75:495–504. https://doi.org/10.1007/s00248-017-1051-6
Visick KL, Foster J, Doino J, McFall-Ngai M, Ruby EG (2000) Vibrio fischeri lux genes play an
important role in colonization and development of the host light organ. J Bacteriol
182:4578–4586. https://doi.org/10.1128/JB.182.16.4578-4586.2000
Wang Y, Dufour YS, Carlson HK, Donohue TJ, Marletta MA, Ruby EG (2010) H-NOX-mediated
nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri. Proc Natl Acad Sci
107:8375–8380. https://doi.org/10.1073/pnas.1003571107
Wang Y, Ruby EG (2011) The roles of NO in microbial symbioses. Cell Microbiol 13:518–526.
https://doi.org/10.1111/j.1462-5822.2011.01576.x
Wegner KM, Piel D, Bruto M, John U, Mao Z, Alunno-Bruscia M, Petton B, Le Roux F (2019)
Molecular targets for coevolutionary interactions between Pacific oyster larvae and their
sympatric vibrios. Front Microbiol 10:1–13. https://doi.org/10.3389/fmicb.2019.02067
Wentrup C, Wendeberg A, Schimak M, Borowski C, Dubilier N (2014) Forever competent: deepsea bivalves are colonized by their chemosynthetic symbionts throughout their lifetime. Environ
Microbiol 16:3699–3713. https://doi.org/10.1111/1462-2920.12597
Yip ES, Grublesky BT, Hussa EA, Visick KL (2005) A novel, conserved cluster of genes promotes
symbiotic colonization and s54-dependent biofilm formation by Vibrio fischeri. Mol Microbiol
57:1485–1498. https://doi.org/10.1111/j.1365-2958.2005.04784.x
Yu J, Wang M, Liu B, Yue X, Li C (2019) Gill symbionts of the cold-seep mussel Bathymodiolus
platifrons: composition, environmental dependency and immune control. Fish Shellfish
Immunol 86:246–252. https://doi.org/10.1016/j.fsi.2018.11.041
Zilber-Rosenberg I, Rosenberg E (2008) Role of microorganisms in the evolution of animals and
plants: the hologenome theory of evolution. FEMS Microbiol Rev 32:723–735. https://doi.org/
10.1111/j.1574-6976.2008.00123.x
526
A. Lasa and J. L. Romalde
Goodnight CJ, Lloyd EA, Sapp J, Vandenkoornhuyse P, Zilber-Rosenberg I, Rosenberg E,
Bordenstein SR (2016) Getting the hologenome concept right: an ecoevolutionary framework
for hosts and their microbiomes. mSystems 1:e00028-16. https://doi.org/10.1128/mSystems.
00028-16
Thompson JR, Polz MF (2006) Dynamics of Vibrio populations and their role in environmental
nutrient cycling. In: Thompson FL, Austin B, Swings J (eds) The biology of Vibrios. ASM
Press, Washington, DC
Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ (2009) Evidence for light
perception in a bioluminescent organ. Proc Natl Acad Sci 106:9836–9841. https://doi.org/10.
1073/pnas.0904571106
Travers MA, Boettcher Miller K, Roque A, Friedman CS (2015) Bacterial diseases in marine
bivalves. J Invertebr Pathol 131:11–31. https://doi.org/10.1016/j.jip.2015.07.010
Tucker NP, LeBrun NE, DixonR HMI (2010) There’s NO stopping NsrR, a global regulator of the
bacterial no stress response. Trends Microbiol 18:149–156. https://doi.org/10.1016/j.tim.2009.
12.009
Vanhove AS, Rubio TP, Nguyen AN, Lemire A, Roche D, Nicod J, Vergnes A, Poirier AC,
Disconzi E, Bachère E, Le Roux F, Jacq A, Charrière GM, Destoumieux-Garzón D (2016)
Copper homeostasis at the host vibrio interface: lessons from intracellular vibrio
transcriptomics. Environ Microbiol 18:875–888. https://doi.org/10.1111/1462-2920.13083
Vezzulli L, Stagnaro L, Grande C, Tassistro G, Canesi L, Pruzzo C (2018) Comparative 16SrDNA
gene-based microbiota profiles of the Pacific oyster (Crassostrea gigas) and the mediterranean
mussel (Mytilus galloprovincialis) from a shellfish farm (Ligurian Sea, Italy). Microb Ecol
75:495–504. https://doi.org/10.1007/s00248-017-1051-6
Visick KL, Foster J, Doino J, McFall-Ngai M, Ruby EG (2000) Vibrio fischeri lux genes play an
important role in colonization and development of the host light organ. J Bacteriol
182:4578–4586. https://doi.org/10.1128/JB.182.16.4578-4586.2000
Wang Y, Dufour YS, Carlson HK, Donohue TJ, Marletta MA, Ruby EG (2010) H-NOX-mediated
nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri. Proc Natl Acad Sci
107:8375–8380. https://doi.org/10.1073/pnas.1003571107
Wang Y, Ruby EG (2011) The roles of NO in microbial symbioses. Cell Microbiol 13:518–526.
https://doi.org/10.1111/j.1462-5822.2011.01576.x
Wegner KM, Piel D, Bruto M, John U, Mao Z, Alunno-Bruscia M, Petton B, Le Roux F (2019)
Molecular targets for coevolutionary interactions between Pacific oyster larvae and their
sympatric vibrios. Front Microbiol 10:1–13. https://doi.org/10.3389/fmicb.2019.02067
Wentrup C, Wendeberg A, Schimak M, Borowski C, Dubilier N (2014) Forever competent: deepsea bivalves are colonized by their chemosynthetic symbionts throughout their lifetime. Environ
Microbiol 16:3699–3713. https://doi.org/10.1111/1462-2920.12597
Yip ES, Grublesky BT, Hussa EA, Visick KL (2005) A novel, conserved cluster of genes promotes
symbiotic colonization and s54-dependent biofilm formation by Vibrio fischeri. Mol Microbiol
57:1485–1498. https://doi.org/10.1111/j.1365-2958.2005.04784.x
Yu J, Wang M, Liu B, Yue X, Li C (2019) Gill symbionts of the cold-seep mussel Bathymodiolus
platifrons: composition, environmental dependency and immune control. Fish Shellfish
Immunol 86:246–252. https://doi.org/10.1016/j.fsi.2018.11.041
Zilber-Rosenberg I, Rosenberg E (2008) Role of microorganisms in the evolution of animals and
plants: the hologenome theory of evolution. FEMS Microbiol Rev 32:723–735. https://doi.org/
10.1111/j.1574-6976.2008.00123.x
526
A. Lasa and J. L. Romalde