References
Adnani N, Rajski SR, Bugni TS (2017) Symbiosis-inspired approaches to antibiotic discovery. Nat
Prod Rep 34(7):784–814. https://doi.org/10.1039/c7np00009j
Andersen SB, Hansen LH, Sapountzis P, Sorensen SJ, Boomsma JJ (2013) Specificity and stability
of the Acromyrmex-Pseudonocardia symbiosis. Mol Ecol 22(16):4307–4321. https://doi.org/
10.1111/mec.12380
Apprill A, Marlow HQ, Martindale MQ, Rappe MS (2009) The onset of microbial associations in
the coral Pocillopora meandrina. ISME J 3(6):685–699. https://doi.org/10.1038/ismej.2009.3
Archetti M, Ubeda F, Fudenberg D, Green J, Pierce NE, Yu DW (2011) Let the right one in: a
microeconomic approach to partner choice in mutualisms. Am Nat 177(1):75–85. https://doi.
org/10.1086/657622
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of root exudates in rhizosphere
interactions with plants and other organisms. Annu Rev Plant Biol 57:233–266. https://doi.org/
10.1146/annurev.arplant.57.032905.105159
Barke J, Seipke RF, Gruschow S, Heavens D, Drou N, Bibb MJ, Goss RJM, Yu DW, Hutchings MI
(2010) A mixed community of actinomycetes produce multiple antibiotics for the fungus
farming ant Acromyrmex octospinosus. BMC Biol 8:109. https://doi.org/10.1186/1741-70078-109
Borewicz K, Suarez-Diez M, Hechler C, Beijers R, de Weerth C, Arts I, Penders J, Thijs C,
Nauta A, Lindner C, Van Leusen E, Vaughan EE, Smidt H (2019) The effect of prebiotic
fortified infant formulas on microbiota composition and dynamics in early life. Sci Rep 9
(1):2434. https://doi.org/10.1038/s41598-018-38268-x
Boza G, Worsley SF, Yu DW, Scheuring I (2019) Efficient assembly and long-term stability of
defensive microbiomes via private resources and community bistability. PLoS Comput Biol 15
(5):e1007109. https://doi.org/10.1371/journal.pcbi.1007109
Brucker RM, Bordenstein SR (2012) The roles of host evolutionary relationships (genus: Nasonia)
and development in structuring microbial communities. Evolution 66(2):349–362. https://doi.
org/10.1111/j.1558-5646.2011.01454.x
Buffie CG, Pamer EG (2013) Microbiota-mediated colonization resistance against intestinal pathogens. Nat Rev Immunol 13(11):790–801. https://doi.org/10.1038/nri3535
Chaparro JM, Badri DV, Bakker MG, Sugiyama A, Manter DK, Vivanco JM (2013) Root
exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally
programmed and correlate with soil microbial functions. PLoS One 8(2):e55731. https://doi.org/
10.1371/journal.pone.0055731
Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J,
Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR,
McDonald BR, Muller L, Melo WGP, Pinto-Tomas AA, Schmitz A, Wendt-Pienkowski E,
Wildman S, Zhao M, Zhang F, Bugni TS, Andes DR, Pupo MT, Currie CR (2019) The
antimicrobial potential of Streptomyces from insect microbiomes. Nat Commun 10(1):516.
https://doi.org/10.1038/s41467-019-08438-0
Currie C, Bot A, Boomsma JJ (2003) Experimental evidence of a tripartite mutualism: bacteria
protect ant fungus gardens from specialized parasites. Oikos 101(1):91–102
Currie CR (2001) A community of ants, fungi, and bacteria: a multilateral approach to studying
symbiosis. Annu Rev Microbiol 55(1):357–380
Currie CR, Mueller UG, Malloch D (1999a) The agricultural pathology of ant fungus gardens. Proc
Natl Acad Sci U S A 96(14):7998–8002
Currie CR, Poulsen M, Mendenhall J, Boomsma JJ, Billen J (2006) Coevolved crypts and exocrine
glands support mutualistic bacteria in fungus-growing ants. Science 311(5757):81–83. https://
doi.org/10.1126/science.1119744
Currie CR, Scott JA, Summerbell RC, Malloch D (1999b) Fungus-growing ants use antibioticproducing bacteria to control garden parasites. Nature 398(6729):701–704. https://doi.org/10.
1038/19519
508
S. Worsley
Adnani N, Rajski SR, Bugni TS (2017) Symbiosis-inspired approaches to antibiotic discovery. Nat
Prod Rep 34(7):784–814. https://doi.org/10.1039/c7np00009j
Andersen SB, Hansen LH, Sapountzis P, Sorensen SJ, Boomsma JJ (2013) Specificity and stability
of the Acromyrmex-Pseudonocardia symbiosis. Mol Ecol 22(16):4307–4321. https://doi.org/
10.1111/mec.12380
Apprill A, Marlow HQ, Martindale MQ, Rappe MS (2009) The onset of microbial associations in
the coral Pocillopora meandrina. ISME J 3(6):685–699. https://doi.org/10.1038/ismej.2009.3
Archetti M, Ubeda F, Fudenberg D, Green J, Pierce NE, Yu DW (2011) Let the right one in: a
microeconomic approach to partner choice in mutualisms. Am Nat 177(1):75–85. https://doi.
org/10.1086/657622
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of root exudates in rhizosphere
interactions with plants and other organisms. Annu Rev Plant Biol 57:233–266. https://doi.org/
10.1146/annurev.arplant.57.032905.105159
Barke J, Seipke RF, Gruschow S, Heavens D, Drou N, Bibb MJ, Goss RJM, Yu DW, Hutchings MI
(2010) A mixed community of actinomycetes produce multiple antibiotics for the fungus
farming ant Acromyrmex octospinosus. BMC Biol 8:109. https://doi.org/10.1186/1741-70078-109
Borewicz K, Suarez-Diez M, Hechler C, Beijers R, de Weerth C, Arts I, Penders J, Thijs C,
Nauta A, Lindner C, Van Leusen E, Vaughan EE, Smidt H (2019) The effect of prebiotic
fortified infant formulas on microbiota composition and dynamics in early life. Sci Rep 9
(1):2434. https://doi.org/10.1038/s41598-018-38268-x
Boza G, Worsley SF, Yu DW, Scheuring I (2019) Efficient assembly and long-term stability of
defensive microbiomes via private resources and community bistability. PLoS Comput Biol 15
(5):e1007109. https://doi.org/10.1371/journal.pcbi.1007109
Brucker RM, Bordenstein SR (2012) The roles of host evolutionary relationships (genus: Nasonia)
and development in structuring microbial communities. Evolution 66(2):349–362. https://doi.
org/10.1111/j.1558-5646.2011.01454.x
Buffie CG, Pamer EG (2013) Microbiota-mediated colonization resistance against intestinal pathogens. Nat Rev Immunol 13(11):790–801. https://doi.org/10.1038/nri3535
Chaparro JM, Badri DV, Bakker MG, Sugiyama A, Manter DK, Vivanco JM (2013) Root
exudation of phytochemicals in Arabidopsis follows specific patterns that are developmentally
programmed and correlate with soil microbial functions. PLoS One 8(2):e55731. https://doi.org/
10.1371/journal.pone.0055731
Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J,
Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR,
McDonald BR, Muller L, Melo WGP, Pinto-Tomas AA, Schmitz A, Wendt-Pienkowski E,
Wildman S, Zhao M, Zhang F, Bugni TS, Andes DR, Pupo MT, Currie CR (2019) The
antimicrobial potential of Streptomyces from insect microbiomes. Nat Commun 10(1):516.
https://doi.org/10.1038/s41467-019-08438-0
Currie C, Bot A, Boomsma JJ (2003) Experimental evidence of a tripartite mutualism: bacteria
protect ant fungus gardens from specialized parasites. Oikos 101(1):91–102
Currie CR (2001) A community of ants, fungi, and bacteria: a multilateral approach to studying
symbiosis. Annu Rev Microbiol 55(1):357–380
Currie CR, Mueller UG, Malloch D (1999a) The agricultural pathology of ant fungus gardens. Proc
Natl Acad Sci U S A 96(14):7998–8002
Currie CR, Poulsen M, Mendenhall J, Boomsma JJ, Billen J (2006) Coevolved crypts and exocrine
glands support mutualistic bacteria in fungus-growing ants. Science 311(5757):81–83. https://
doi.org/10.1126/science.1119744
Currie CR, Scott JA, Summerbell RC, Malloch D (1999b) Fungus-growing ants use antibioticproducing bacteria to control garden parasites. Nature 398(6729):701–704. https://doi.org/10.
1038/19519
508
S. Worsley