Martínez-Hidalgo P, Maymon M, Pule-Meulenberg F, Hirsch AM (2018) Engineering root
microbiomes for healthier crops and soils using beneficial, environmentally safe bacteria. Can
J Microbiol 65:91–104. https://doi.org/10.1139/cjm-2018-0315
Mishra PK, Mishra S, Selvakumar G, Bisht JK, Kundu S, Gupta HS (2009) Coinoculation of
Bacillus thuringeinsis-KR1 with Rhizobium leguminosarum enhances plant growth and nodulation of pea (Pisum sativum L.) and lentil (Lens culinaris L.). World J Microbiol Biotechnol
25:753–761
Nelson EB (2018) The seed microbiome: origins, interactions, and impacts. Plant Soil 422:7–34
Pasteur L (1885) Observation relative à la note précédente de M. Duclaux. Compte Rendus
Ge. Acad Sci 100:68
Pirozynski KA, Malloch DW (1975) The origin of land plants: a matter of mycotrophism.
Biosystems 6:153–164
Redecker D, Kodner E, Graham LE (2000) Glomalean fungi from the Ordovician. Science
289:1920–1921
Remy W et al (1994) Four hundred-million-year-old vesicular arbuscular mycorrhizae. Proc Natl
Acad Sci U S A 91:11841–11843
Rodriguez R, Durán P (2020) Natural holobiome engineering by using native extreme microbiome
to counteract the climate change effects. Front Bioeng Biotechnol 8:568. https://doi.org/10.
3389/fbioe.2020.00568
Rohwer F, Seguritan V, Azam F, Knowlton N (2002) Diversity and distribution of coral associated
bacteria. Mar Ecol Prog Ser 243:1–10
Rosenberg E, Zilber-Rosenberg I (2018) The hologenome concept of evolution after 10 years.
Microbiome 6:78. https://doi.org/10.1186/s40168-018-0457-9
Rosenberg E, Koren O, Reshef L, Efrony R, Zilber-Rosenberg I (2007) The role of microorganisms
in coral health, disease and evolution. Nat Rev Microbiol 5:355
Rubenstein CV, Gerrienne P, de la Puente GS, Astíni RA, Steemans P (2010) Early middle
Ordovician evidence for land plants in Argentina (eastern Gondwana). New Phytol
188:365–369
Ruzzi M, Aroca R (2015) Plant growth-promoting rhizobactertia act as biostimulants in horticultures. Sci Hortic 196:124–134
Sattar A, Naveed M, Ali M, Zahir ZA, Nadeem SM, Yaseen M (2019) Perspectives of potassium
solubilizing microbes in sustainable food production system: a review. Appl Soil Ecol
133:146–159
Schwartz AR, Ortiz I, Maymon M, Herbold CW, Fujishige NA, Vijanderan JA, Villella W,
Hanamoto K, Diener A, Sanders ER, DeMason DA, Hirsch AM (2013) Bacillus simplex—a
little known PGPB with anti-fungal activity—alters pea legume root architecture and nodule
morphology when coinoculated with Rhizobium leguminosarum bv. viciae. Agronomy
3:595–620. https://doi.org/10.3390/agronomy3040595
Smercina DN, Evans SE, Friesen ML, Tiemann LK (2019) To fix or not to fix: controls on freeliving nitrogen fixation in the rhizosphere. Appl Environ Microbiol 85:e02546–e02518
Stein WE, Berrry CM, Morris JL, Hernick LV, Mannonlini F, Ver Straeten C, Landing E, Marshall
JEA, Wellman CH, Beerling DJ, Leake JR (2019) Mid-Devonian Archaeopteris roots signal
revolutionary changes in earliest fossil forests. Curr Biol 30:421. https://doi.org/10.1016/j.cub.
2019.11.067
Strother PK, Al-Hajri S, Traverse A (1996) New evidence for land plants from the lower middle
Ordovician of Saudi Arabia. Geology 24:55–58
Suárez Díaz J (2019) The Hologenome concept of evolution: a philosophical and biological study.
PhD thesis, University of Exeter, Exeter, The United Kingdom
Tomescu AMF, Honegger R, Rothwell GW (2008) Earliest fossil record of bacterial-cyanobacterial
mat consortia: the early Silurian Passage Creek biota (440 ma, Virginia, USA). Geobiology
6:120–124
Uroz S, Calvaruso C, Turpault MP, Frey-Klett P (2009) Mineral weathering by bacteria: ecology,
actors and mechanisms. Trends Microbiol 17:378–387
21 The Hologenome Hypothesis and Its Application to Plant-Microbe Interactions on. . .
439
microbiomes for healthier crops and soils using beneficial, environmentally safe bacteria. Can
J Microbiol 65:91–104. https://doi.org/10.1139/cjm-2018-0315
Mishra PK, Mishra S, Selvakumar G, Bisht JK, Kundu S, Gupta HS (2009) Coinoculation of
Bacillus thuringeinsis-KR1 with Rhizobium leguminosarum enhances plant growth and nodulation of pea (Pisum sativum L.) and lentil (Lens culinaris L.). World J Microbiol Biotechnol
25:753–761
Nelson EB (2018) The seed microbiome: origins, interactions, and impacts. Plant Soil 422:7–34
Pasteur L (1885) Observation relative à la note précédente de M. Duclaux. Compte Rendus
Ge. Acad Sci 100:68
Pirozynski KA, Malloch DW (1975) The origin of land plants: a matter of mycotrophism.
Biosystems 6:153–164
Redecker D, Kodner E, Graham LE (2000) Glomalean fungi from the Ordovician. Science
289:1920–1921
Remy W et al (1994) Four hundred-million-year-old vesicular arbuscular mycorrhizae. Proc Natl
Acad Sci U S A 91:11841–11843
Rodriguez R, Durán P (2020) Natural holobiome engineering by using native extreme microbiome
to counteract the climate change effects. Front Bioeng Biotechnol 8:568. https://doi.org/10.
3389/fbioe.2020.00568
Rohwer F, Seguritan V, Azam F, Knowlton N (2002) Diversity and distribution of coral associated
bacteria. Mar Ecol Prog Ser 243:1–10
Rosenberg E, Zilber-Rosenberg I (2018) The hologenome concept of evolution after 10 years.
Microbiome 6:78. https://doi.org/10.1186/s40168-018-0457-9
Rosenberg E, Koren O, Reshef L, Efrony R, Zilber-Rosenberg I (2007) The role of microorganisms
in coral health, disease and evolution. Nat Rev Microbiol 5:355
Rubenstein CV, Gerrienne P, de la Puente GS, Astíni RA, Steemans P (2010) Early middle
Ordovician evidence for land plants in Argentina (eastern Gondwana). New Phytol
188:365–369
Ruzzi M, Aroca R (2015) Plant growth-promoting rhizobactertia act as biostimulants in horticultures. Sci Hortic 196:124–134
Sattar A, Naveed M, Ali M, Zahir ZA, Nadeem SM, Yaseen M (2019) Perspectives of potassium
solubilizing microbes in sustainable food production system: a review. Appl Soil Ecol
133:146–159
Schwartz AR, Ortiz I, Maymon M, Herbold CW, Fujishige NA, Vijanderan JA, Villella W,
Hanamoto K, Diener A, Sanders ER, DeMason DA, Hirsch AM (2013) Bacillus simplex—a
little known PGPB with anti-fungal activity—alters pea legume root architecture and nodule
morphology when coinoculated with Rhizobium leguminosarum bv. viciae. Agronomy
3:595–620. https://doi.org/10.3390/agronomy3040595
Smercina DN, Evans SE, Friesen ML, Tiemann LK (2019) To fix or not to fix: controls on freeliving nitrogen fixation in the rhizosphere. Appl Environ Microbiol 85:e02546–e02518
Stein WE, Berrry CM, Morris JL, Hernick LV, Mannonlini F, Ver Straeten C, Landing E, Marshall
JEA, Wellman CH, Beerling DJ, Leake JR (2019) Mid-Devonian Archaeopteris roots signal
revolutionary changes in earliest fossil forests. Curr Biol 30:421. https://doi.org/10.1016/j.cub.
2019.11.067
Strother PK, Al-Hajri S, Traverse A (1996) New evidence for land plants from the lower middle
Ordovician of Saudi Arabia. Geology 24:55–58
Suárez Díaz J (2019) The Hologenome concept of evolution: a philosophical and biological study.
PhD thesis, University of Exeter, Exeter, The United Kingdom
Tomescu AMF, Honegger R, Rothwell GW (2008) Earliest fossil record of bacterial-cyanobacterial
mat consortia: the early Silurian Passage Creek biota (440 ma, Virginia, USA). Geobiology
6:120–124
Uroz S, Calvaruso C, Turpault MP, Frey-Klett P (2009) Mineral weathering by bacteria: ecology,
actors and mechanisms. Trends Microbiol 17:378–387
21 The Hologenome Hypothesis and Its Application to Plant-Microbe Interactions on. . .
439