Xavier Mayali
Recommended Literature
Azam F, Fenchel T, Field JG, Gray JS, Meyer Reil LA, Thingstad F (1983) The ecological role of
water-column microbes in the sea. Mar Ecol Prog Ser 10:257–263
Diener C, Gibbons SM, Resendis-Antonio O (2020) MICOM: metagenome-scale modeling to infer
metabolic interactions in the gut microbiota. mSystems 5:e00606–e00619
Doney SC, Fabry VJ, Feely RA, Kleypas JA (2009) Ocean acidification: the other CO 2 problem.
Annu Rev Mar Sci 1:169–192
Fenchel T, Finlay BJ (1994) The evolution of life without oxygen. Am Sci 82:22–29
Figueroa IA, Barnum TP, Somasekhar PY, Carlström CI, Engelbrektson AL, Coates JD (2018)
Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields
evidence of a seventh natural CO 2 fixation pathway. Proc Natl Acad Sci 115:E92–E101
Fuhrman JA (1999) Marine viruses and their biogeochemical and ecological effects. Nature
399:541–548
Gómez-Consarnau L, Raven JA, Levine NM, Cutter LS, Wang D, Seegers B, Arístegui J, Fuhrman
JA, Gasol JM, Sañudo-Wilhelmy SA (2019) Microbial rhodopsins are major contributors to the
solar energy captured in the sea. Sci Adv 5:eaaw8855
Gould AL, Zhang V, Lamberti L, Jones EW, Obadia B, Korasidis N, Gavryushkin A, Carlson JM,
Beerenwinkel N, Ludington WB (2018) Microbiome interactions shape host fitness. Proc Natl
Acad Sci 115:E11951
Hobbie JE, Daley RJ, Jasper J (1977) Use of nucleopore filters for counting bacteria by fluorescence
microscopy. Appl Environ Microbiol 33:1225–1228
Mayali X (2020) NanoSIMS: microscale quantification of biogeochemical activity with large-scale
impacts. Annu Rev Mar Sci 12:449–467
Pett-Ridge J, Weber PK (2012) NanoSIP: nanoSIMS applications for microbial biology. In: Navid
A (ed) Microbial systems biology: methods and protocols. Humana Press, Totowa, NJ
Pomeroy LR (1974) The ocean’s food web, a changing paradigm. Bioscience 24:499–504
Radajewski S, Ineson P, Parekh NR, Murrell JC (2000) Stable-isotope probing as a tool in microbial
ecology. Nature 403:646–649
Smriga S, Fernandez VI, Mitchell JG, Stocker R (2016) Chemotaxis toward phytoplankton drives
organic matter partitioning among marine bacteria. Proc Natl Acad Sci 113:1576–1581
Stubbendieck RM, Vargas-Bautista C, Straight PD (2016) Bacterial communities: interactions to
scale. Front Microbiol 7:1234
210
X. Mayali
Recommended Literature
Azam F, Fenchel T, Field JG, Gray JS, Meyer Reil LA, Thingstad F (1983) The ecological role of
water-column microbes in the sea. Mar Ecol Prog Ser 10:257–263
Diener C, Gibbons SM, Resendis-Antonio O (2020) MICOM: metagenome-scale modeling to infer
metabolic interactions in the gut microbiota. mSystems 5:e00606–e00619
Doney SC, Fabry VJ, Feely RA, Kleypas JA (2009) Ocean acidification: the other CO 2 problem.
Annu Rev Mar Sci 1:169–192
Fenchel T, Finlay BJ (1994) The evolution of life without oxygen. Am Sci 82:22–29
Figueroa IA, Barnum TP, Somasekhar PY, Carlström CI, Engelbrektson AL, Coates JD (2018)
Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields
evidence of a seventh natural CO 2 fixation pathway. Proc Natl Acad Sci 115:E92–E101
Fuhrman JA (1999) Marine viruses and their biogeochemical and ecological effects. Nature
399:541–548
Gómez-Consarnau L, Raven JA, Levine NM, Cutter LS, Wang D, Seegers B, Arístegui J, Fuhrman
JA, Gasol JM, Sañudo-Wilhelmy SA (2019) Microbial rhodopsins are major contributors to the
solar energy captured in the sea. Sci Adv 5:eaaw8855
Gould AL, Zhang V, Lamberti L, Jones EW, Obadia B, Korasidis N, Gavryushkin A, Carlson JM,
Beerenwinkel N, Ludington WB (2018) Microbiome interactions shape host fitness. Proc Natl
Acad Sci 115:E11951
Hobbie JE, Daley RJ, Jasper J (1977) Use of nucleopore filters for counting bacteria by fluorescence
microscopy. Appl Environ Microbiol 33:1225–1228
Mayali X (2020) NanoSIMS: microscale quantification of biogeochemical activity with large-scale
impacts. Annu Rev Mar Sci 12:449–467
Pett-Ridge J, Weber PK (2012) NanoSIP: nanoSIMS applications for microbial biology. In: Navid
A (ed) Microbial systems biology: methods and protocols. Humana Press, Totowa, NJ
Pomeroy LR (1974) The ocean’s food web, a changing paradigm. Bioscience 24:499–504
Radajewski S, Ineson P, Parekh NR, Murrell JC (2000) Stable-isotope probing as a tool in microbial
ecology. Nature 403:646–649
Smriga S, Fernandez VI, Mitchell JG, Stocker R (2016) Chemotaxis toward phytoplankton drives
organic matter partitioning among marine bacteria. Proc Natl Acad Sci 113:1576–1581
Stubbendieck RM, Vargas-Bautista C, Straight PD (2016) Bacterial communities: interactions to
scale. Front Microbiol 7:1234
210
X. Mayali