The general definition of an induced network IN(N
0 ,L
0 ) of
PCN(N,L) is a subset N
0 of nodes in N, and there is a link in the
induced network between n,m ∈ N
0 if there exists a link between
the nodes n and m in PCN(N,L) (see for example the textbook
[14]). Thus, the induced graph is a subgraph of nodes N
0 and all
links in L but only between nodes in N
0 .
Fig. 6 PCN for 1EEI (representation of the network by Gephi)
H8
H3
D48
D50
D49
D47
D40
D41
D39
D38
D37
H2
H4
D29
D28
D26
D27
Fig. 7 Zoom in the 1EEI PCN. First neighbors of D39 (Black circle) with amino acids in the D chain (Blue circle,
intramolecular residues) and in the H chain (Red circle, intermolecular residues); D39, H2, H3, H4 and H6 are
Hot Spots (Amino Acids in the interface)
Topology Results on Adjacent Amino Acid Networks of Oligomeric Proteins
119
0 ,L
0 ) of
PCN(N,L) is a subset N
0 of nodes in N, and there is a link in the
induced network between n,m ∈ N
0 if there exists a link between
the nodes n and m in PCN(N,L) (see for example the textbook
[14]). Thus, the induced graph is a subgraph of nodes N
0 and all
links in L but only between nodes in N
0 .
Fig. 6 PCN for 1EEI (representation of the network by Gephi)
H8
H3
D48
D50
D49
D47
D40
D41
D39
D38
D37
H2
H4
D29
D28
D26
D27
Fig. 7 Zoom in the 1EEI PCN. First neighbors of D39 (Black circle) with amino acids in the D chain (Blue circle,
intramolecular residues) and in the H chain (Red circle, intermolecular residues); D39, H2, H3, H4 and H6 are
Hot Spots (Amino Acids in the interface)
Topology Results on Adjacent Amino Acid Networks of Oligomeric Proteins
119