References
1. Rich RL, Myszka DG (2011) Survey of the
2009 commercial optical biosensor literature.
J Mol Recognit 24:892–914
2. Knezevic J, Langer A, Hampel PA et al (2012)
Quantitation of affinity, avidity, and binding
kinetics of protein analytes with a dynamically
switchable biosurface. J Am Chem Soc
134:15225–15228
3. Langer A, Hampel PA, Kaiser W et al (2013)
Protein analysis by time-resolved measurements with an electro-switchable DNA chip.
Nat Commun 4:2099
4. Alt A, Dang HQ, Wells OS et al (2017)
Specialized interfaces of Smc5/6 control
hinge stability and DNA association. Nat Commun 8:14011
5. Blocquel D, Li S, Wei N et al (2017) Alternative stable conformation capable of protein
misinteraction links tRNA synthetase to
peripheral neuropathy. Nucleic Acids Res
45:8091–8104
6. Denichenko P, Mogilevsky M, Clery A et al
(2019) Specific inhibition of splicing factor
activity by decoy RNA oligonucleotides. Nat
Commun 10:1590
7. Nemoz C, Ropars V, Frit P et al (2018) XLF
and APLF bind Ku80 at two remote sites to
ensure DNA repair by non-homologous end
joining. Nat Struct Mol Biol 25:971–980
8. Ploschik D, Ronicke F, Beike H et al (2018)
DNA primer extension with cyclopropenylated
7-Deaza-2
0 -deoxyadenosine
and
efficient
bioorthogonal labeling in vitro and in living
cells. Chembiochem 19:1949–1953
9. Rueda FO, Bista M, Newton MD et al (2017)
Mapping the sugar dependency for rational
generation of a DNA-RNA hybrid-guided
Cas9 endonuclease. Nat Commun 8:1610
10. Webster MW, Chen YH, Stowell JAW et al
(2018) mRNA deadenylation is coupled to
translation rates by the differential activities of
Ccr4-not nucleases. Mol Cell 70:1089–1100.
e8
11. Webster MW, Stowell JA, Passmore LA (2019)
RNA-binding proteins distinguish between
similar sequence motifs to promote targeted
deadenylation by Ccr4-Not. elife 8:e40670
12. Kroener F, Heerwig A, Kaiser W et al (2017)
Electrical actuation of a DNA origami nanolever on an electrode. J Am Chem Soc
139:16510–16513
13. Clery A, Sohier TJM, Welte T et al (2017)
switchSENSE: a new technology to study
protein-RNA
interactions.
Methods
118-119:137–145
14. Langer A, Schraml M, Strasser R et al (2015)
Polymerase/DNA interactions and enzymatic
activity: multi-parameter analysis with electroswitchable biosurfaces. Sci Rep 5:12066
15. Freisz S, Bec G, Radi M et al (2010) Crystal
structure of HIV-1 reverse transcriptase bound
to a non-nucleoside inhibitor with a novel
mechanism of action. Angew Chem Int Ed
Engl 49:1805–1808
Analysis of a DNA Polymerase Using switchSENSE Approach
153
1. Rich RL, Myszka DG (2011) Survey of the
2009 commercial optical biosensor literature.
J Mol Recognit 24:892–914
2. Knezevic J, Langer A, Hampel PA et al (2012)
Quantitation of affinity, avidity, and binding
kinetics of protein analytes with a dynamically
switchable biosurface. J Am Chem Soc
134:15225–15228
3. Langer A, Hampel PA, Kaiser W et al (2013)
Protein analysis by time-resolved measurements with an electro-switchable DNA chip.
Nat Commun 4:2099
4. Alt A, Dang HQ, Wells OS et al (2017)
Specialized interfaces of Smc5/6 control
hinge stability and DNA association. Nat Commun 8:14011
5. Blocquel D, Li S, Wei N et al (2017) Alternative stable conformation capable of protein
misinteraction links tRNA synthetase to
peripheral neuropathy. Nucleic Acids Res
45:8091–8104
6. Denichenko P, Mogilevsky M, Clery A et al
(2019) Specific inhibition of splicing factor
activity by decoy RNA oligonucleotides. Nat
Commun 10:1590
7. Nemoz C, Ropars V, Frit P et al (2018) XLF
and APLF bind Ku80 at two remote sites to
ensure DNA repair by non-homologous end
joining. Nat Struct Mol Biol 25:971–980
8. Ploschik D, Ronicke F, Beike H et al (2018)
DNA primer extension with cyclopropenylated
7-Deaza-2
0 -deoxyadenosine
and
efficient
bioorthogonal labeling in vitro and in living
cells. Chembiochem 19:1949–1953
9. Rueda FO, Bista M, Newton MD et al (2017)
Mapping the sugar dependency for rational
generation of a DNA-RNA hybrid-guided
Cas9 endonuclease. Nat Commun 8:1610
10. Webster MW, Chen YH, Stowell JAW et al
(2018) mRNA deadenylation is coupled to
translation rates by the differential activities of
Ccr4-not nucleases. Mol Cell 70:1089–1100.
e8
11. Webster MW, Stowell JA, Passmore LA (2019)
RNA-binding proteins distinguish between
similar sequence motifs to promote targeted
deadenylation by Ccr4-Not. elife 8:e40670
12. Kroener F, Heerwig A, Kaiser W et al (2017)
Electrical actuation of a DNA origami nanolever on an electrode. J Am Chem Soc
139:16510–16513
13. Clery A, Sohier TJM, Welte T et al (2017)
switchSENSE: a new technology to study
protein-RNA
interactions.
Methods
118-119:137–145
14. Langer A, Schraml M, Strasser R et al (2015)
Polymerase/DNA interactions and enzymatic
activity: multi-parameter analysis with electroswitchable biosurfaces. Sci Rep 5:12066
15. Freisz S, Bec G, Radi M et al (2010) Crystal
structure of HIV-1 reverse transcriptase bound
to a non-nucleoside inhibitor with a novel
mechanism of action. Angew Chem Int Ed
Engl 49:1805–1808
Analysis of a DNA Polymerase Using switchSENSE Approach
153