Bogner J (2009) The free-floating Aroids (Araceae)—
living and fossil. Zitteliana 48:113–128
Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW,
Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F,
Liu W, Hsiao YY, Pan ZJ, Hsu CC, Yang YP,
Hsu YC, Chuang YC, Dievart A, Dufayard JF, Xu X,
Wang JY, Wang J, Xiao XJ, Zhao XM, Du R,
Zhang GQ, Wang M, Su YY, Xie GC, Liu GH, Li LQ,
Huang LQ, Luo YB, Chen HH, Van de Peer Y, Liu ZJ
(2015) The genome sequence of the orchid Phalaenopsis equestris. Nat Genet 47:65–72
Cui R, Han J, Zhao S, Su K, Wu F, Du X, Xu Q,
Chong K, Theißen G, Meng Z (2010) Functional
conservation and diversification of class E floral
homeotic genes in rice (Oryza sativa). Plant J
61:767–781
Ernst E (2016) Status of the Lemna gibba 7742a and
Lemna minor 8627 genomes. ISCDRA 3:9–10
García-Cruz KV, García-Ponce B, Garay-Arroyo A,
Sanchez MP, Ugartechea-Chirino Y, Desvoyes B,
Pacheco-Escobedo
MA,
Tapia-López
R,
Ransom-Rodríguez I, Gutierrez C, Alvarez-Buylla
ER (2016) The MADS-box XAANTAL1 increases
proliferation at the Arabidopsis root stem-cell niche
and participates in transition to differentiation by
regulating cell-cycle components. Ann Bot 4:787–796
Gramzow L, Theißen G (2010) A hitchhiker’s guide to
the MADS world of plants. Genome Biol 11:214
Gramzow L, Theißen G (2013) Phylogenomics of
MADS-box genes in plants—two opposing life styles
in one gene family. Biology 2:1150–1164
Gramzow L, Theißen G (2015) Phylogenomics reveals
surprising sets of essential and dispensable clades of
MIKC
C -group MADS-box genes in flowering plants.
J Exp Zool (Mol Develop Evol) 324B:353–362
Gramzow L, Barker E, Schulz C, Ambrose B, Ashton N,
Theißen G, Litt A (2012) Selaginella genome analysis
—entering the “homoplasy heaven” of the MADS
world. Front Plant Sci 3:214
Gramzow L, Ritz MS, Theißen G (2010) On the origin of
MADS-domain transcription factors. Trends Genet
26:149–153
Gramzow L, Weilandt L, Theißen G (2014) MADS goes
genomic in conifers: towards determining the ancestral
set of MADS-box genes in seed plants. Ann Bot
114:1407–1429
Hoang PNT, Michael TP, Gilbert S, Chu P, Motley ST,
Appenroth KJ, Schubert I, Lam E (2018) Generating a
high-confidence reference genome map of the Greater
Duckweed by integration of cytogenomic, optical
mapping, and Oxford Nanopore technologies. Plant J
96:670–684
Hoffmeier A, Gramzow L, Bhide A, Kottenhagen N,
Greifenstein A, Schubert O, Mummenhoff K,
Becker A, Theißen G (2018) A dead gene walking:
convergent degeneration of a clade of MADS-box
genes in Crucifers. Mol Biol Evol 35:2618–2638
Kumar S, Stecher G, Suleski M, Hedges SB (2017)
TimeTree: a resource for timelines, timetrees, and
divergence times. Mol Biol Evol 34:1812–1819
Liu Y, Cui S, Wu F, Yan S, Lin X, Du X, Chong K,
Schilling S, Theißen G, Meng Z (2013) Functional
conservation of MIKC*-type MADS box genes in
Arabidopsis and rice pollen maturation. Plant Cell
25:1288–1303
Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P,
Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, ten
Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S,
McEntee C, Jackson SA, Mockler TC, Zhang W,
Lam E (2017) Comprehensive definition of genome
features in Spirodela polyrhiza by high-depth physical
mapping and short-read DNA sequencing strategies.
Plant J 89:617–635
Olsen JL, Rouzé P, Verhelst B, Lin YC, Bayer T,
Collen J, Dattolo E, De Paoli E, Dittami S, Maumus F,
Michel G, Kersting A, Lauritano C, Lohaus R, Töpel
M, Tonon T, Vanneste K, Amirebrahim M, Brakel J,
Boström C, Chovatia M, Grimwood J, Jenkins JW,
Jueterbock A, Mraz A, Stam WT, Tice H,
Bornberg-Bauer E, Green PJ, Pearson GA, Procaccini G, Duarte CM, Schmutz J, Reusch TB, Van de
Peer Y (2016) The genome of the seagrass Zostera
marina reveals angiosperm adaptation to the sea.
Nature 530:331–335
Panchy N, Lehti-Shiu M, Shiu S-H (2016) Evolution of
gene duplication in plants. Plant Physiol 171:2294–2316
Pelaz S, Ditta GS, Baumann E, Wisman E, Yanofsky MF
(2000) B and C floral organ identity functions require
SEPALLATA MADS-box genes. Nature 405:200–203
Rijpkema AS, Zethof J, Gerats T, Vandenbussche M
(2009) The petunia AGL6 gene has a
SEPALLATA-like function in floral patterning.
Plant J 60:1–9
Smaczniak C, Immink RGH, Angenent GC, Kaufmann K
(2012) Developmental and evolutionary diversity of
plant MADS-domain factors: insights from recent
studies. Development 139:3081–3098
Sree KS, Maheshwari SC, Boka K, Khurana JP,
Keresztes A, Appenroth K-J (2015) The duckweed
Wolffia microscopica: a unique aquatic monocot. Flora
210:31–39
Sun G, Xu Y, Liu H, Sun T, Zhang J, Hettenhausen C,
Shen G, Qi J, Qin Y, Li J, Wang L, Chang W, Guo Z,
Baldwin IT, Wu J (2018) Large-scale gene losses
underlie the genome evolution of parasitic plant
Cuscuta australis. Nat Comm 9:1–8
Tapia-López R, Garcia-Ponce B, Dubrovsky JG,
Garay-Arroyo A, Pérez-Ruiz RV, Kim SH,
Acevedo F, Pelaz S, Alvarez-Buylla ER (2008) An
AGAMOUS-related MADS-box gene, XAL1
(AGL12), regulates root meristem cell proliferation
and flowering transition in Arabidopsis. Plant Physiol
146:1182–1192
Theißen G, Gramzow L (2016) Structure and evolution of
plant MADS-domain transcription factors. In: Gonzalez DH (ed) Plant transcription factors: evolutionary,
structural and functional aspects, pp 127–138. Elsevier
Inc.
Theißen G, Becker A, Di Rosa A, Kanno A, Kim JT,
Münster T, Winter K-U, Saedler H (2000) A short
100
L. Gramzow and G. Theißen
living and fossil. Zitteliana 48:113–128
Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW,
Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F,
Liu W, Hsiao YY, Pan ZJ, Hsu CC, Yang YP,
Hsu YC, Chuang YC, Dievart A, Dufayard JF, Xu X,
Wang JY, Wang J, Xiao XJ, Zhao XM, Du R,
Zhang GQ, Wang M, Su YY, Xie GC, Liu GH, Li LQ,
Huang LQ, Luo YB, Chen HH, Van de Peer Y, Liu ZJ
(2015) The genome sequence of the orchid Phalaenopsis equestris. Nat Genet 47:65–72
Cui R, Han J, Zhao S, Su K, Wu F, Du X, Xu Q,
Chong K, Theißen G, Meng Z (2010) Functional
conservation and diversification of class E floral
homeotic genes in rice (Oryza sativa). Plant J
61:767–781
Ernst E (2016) Status of the Lemna gibba 7742a and
Lemna minor 8627 genomes. ISCDRA 3:9–10
García-Cruz KV, García-Ponce B, Garay-Arroyo A,
Sanchez MP, Ugartechea-Chirino Y, Desvoyes B,
Pacheco-Escobedo
MA,
Tapia-López
R,
Ransom-Rodríguez I, Gutierrez C, Alvarez-Buylla
ER (2016) The MADS-box XAANTAL1 increases
proliferation at the Arabidopsis root stem-cell niche
and participates in transition to differentiation by
regulating cell-cycle components. Ann Bot 4:787–796
Gramzow L, Theißen G (2010) A hitchhiker’s guide to
the MADS world of plants. Genome Biol 11:214
Gramzow L, Theißen G (2013) Phylogenomics of
MADS-box genes in plants—two opposing life styles
in one gene family. Biology 2:1150–1164
Gramzow L, Theißen G (2015) Phylogenomics reveals
surprising sets of essential and dispensable clades of
MIKC
C -group MADS-box genes in flowering plants.
J Exp Zool (Mol Develop Evol) 324B:353–362
Gramzow L, Barker E, Schulz C, Ambrose B, Ashton N,
Theißen G, Litt A (2012) Selaginella genome analysis
—entering the “homoplasy heaven” of the MADS
world. Front Plant Sci 3:214
Gramzow L, Ritz MS, Theißen G (2010) On the origin of
MADS-domain transcription factors. Trends Genet
26:149–153
Gramzow L, Weilandt L, Theißen G (2014) MADS goes
genomic in conifers: towards determining the ancestral
set of MADS-box genes in seed plants. Ann Bot
114:1407–1429
Hoang PNT, Michael TP, Gilbert S, Chu P, Motley ST,
Appenroth KJ, Schubert I, Lam E (2018) Generating a
high-confidence reference genome map of the Greater
Duckweed by integration of cytogenomic, optical
mapping, and Oxford Nanopore technologies. Plant J
96:670–684
Hoffmeier A, Gramzow L, Bhide A, Kottenhagen N,
Greifenstein A, Schubert O, Mummenhoff K,
Becker A, Theißen G (2018) A dead gene walking:
convergent degeneration of a clade of MADS-box
genes in Crucifers. Mol Biol Evol 35:2618–2638
Kumar S, Stecher G, Suleski M, Hedges SB (2017)
TimeTree: a resource for timelines, timetrees, and
divergence times. Mol Biol Evol 34:1812–1819
Liu Y, Cui S, Wu F, Yan S, Lin X, Du X, Chong K,
Schilling S, Theißen G, Meng Z (2013) Functional
conservation of MIKC*-type MADS box genes in
Arabidopsis and rice pollen maturation. Plant Cell
25:1288–1303
Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P,
Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, ten
Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S,
McEntee C, Jackson SA, Mockler TC, Zhang W,
Lam E (2017) Comprehensive definition of genome
features in Spirodela polyrhiza by high-depth physical
mapping and short-read DNA sequencing strategies.
Plant J 89:617–635
Olsen JL, Rouzé P, Verhelst B, Lin YC, Bayer T,
Collen J, Dattolo E, De Paoli E, Dittami S, Maumus F,
Michel G, Kersting A, Lauritano C, Lohaus R, Töpel
M, Tonon T, Vanneste K, Amirebrahim M, Brakel J,
Boström C, Chovatia M, Grimwood J, Jenkins JW,
Jueterbock A, Mraz A, Stam WT, Tice H,
Bornberg-Bauer E, Green PJ, Pearson GA, Procaccini G, Duarte CM, Schmutz J, Reusch TB, Van de
Peer Y (2016) The genome of the seagrass Zostera
marina reveals angiosperm adaptation to the sea.
Nature 530:331–335
Panchy N, Lehti-Shiu M, Shiu S-H (2016) Evolution of
gene duplication in plants. Plant Physiol 171:2294–2316
Pelaz S, Ditta GS, Baumann E, Wisman E, Yanofsky MF
(2000) B and C floral organ identity functions require
SEPALLATA MADS-box genes. Nature 405:200–203
Rijpkema AS, Zethof J, Gerats T, Vandenbussche M
(2009) The petunia AGL6 gene has a
SEPALLATA-like function in floral patterning.
Plant J 60:1–9
Smaczniak C, Immink RGH, Angenent GC, Kaufmann K
(2012) Developmental and evolutionary diversity of
plant MADS-domain factors: insights from recent
studies. Development 139:3081–3098
Sree KS, Maheshwari SC, Boka K, Khurana JP,
Keresztes A, Appenroth K-J (2015) The duckweed
Wolffia microscopica: a unique aquatic monocot. Flora
210:31–39
Sun G, Xu Y, Liu H, Sun T, Zhang J, Hettenhausen C,
Shen G, Qi J, Qin Y, Li J, Wang L, Chang W, Guo Z,
Baldwin IT, Wu J (2018) Large-scale gene losses
underlie the genome evolution of parasitic plant
Cuscuta australis. Nat Comm 9:1–8
Tapia-López R, Garcia-Ponce B, Dubrovsky JG,
Garay-Arroyo A, Pérez-Ruiz RV, Kim SH,
Acevedo F, Pelaz S, Alvarez-Buylla ER (2008) An
AGAMOUS-related MADS-box gene, XAL1
(AGL12), regulates root meristem cell proliferation
and flowering transition in Arabidopsis. Plant Physiol
146:1182–1192
Theißen G, Gramzow L (2016) Structure and evolution of
plant MADS-domain transcription factors. In: Gonzalez DH (ed) Plant transcription factors: evolutionary,
structural and functional aspects, pp 127–138. Elsevier
Inc.
Theißen G, Becker A, Di Rosa A, Kanno A, Kim JT,
Münster T, Winter K-U, Saedler H (2000) A short
100
L. Gramzow and G. Theißen